Bug#1029202: snippy: Error when using snpeff 5.1

2023-11-28 Thread Andreas Tille
Hi, since version 5.2.b is not worse than 5.1 (= upstream upgrade with the very same problematic output as version 5.1) I decided to update to the latest upstream version and pinged upstream again[1]. Kind regards Andreas. [1] https://github.com/pcingola/SnpEff/issues/455 -- http://fam-ti

Bug#1029202: snippy: Error when using snpeff 5.1

2023-08-26 Thread Andreas Tille
Hi Pierre, writing from some weak connection while traveling. Am Fri, Aug 25, 2023 at 02:30:45PM +0200 schrieb Pierre Gruet: > I found some time :-D > Upstream changed the location of the build-time tests, putting them in a > more canonical place. I updated the patches and d/rules accordingly. T

Bug#1029202: snippy: Error when using snpeff 5.1

2023-08-25 Thread Pierre Gruet
Hi Andreas, Le 24/08/2023 à 11:21, Andreas Tille a écrit : Hi Pierre, I just noticed that snpeff upstream has tagged a new release. I've injected the new tarball into Salsa Git but did not yet worked on the quilt patches that need to be adapted. If you throw an ENOTIME error I could see how f

Bug#1029202: snippy: Error when using snpeff 5.1

2023-08-24 Thread Andreas Tille
Hi Pierre, I just noticed that snpeff upstream has tagged a new release. I've injected the new tarball into Salsa Git but did not yet worked on the quilt patches that need to be adapted. If you throw an ENOTIME error I could see how far I might come with the changes. If you find some spare time

Bug#1029202: snippy: Error when using snpeff 5.1

2023-02-07 Thread Andreas Tille
Hi, since upstream is not very quick in answering to questions in issues I had a look myself into the upstream repository and checked when the version string was bumped to the last release of the 5.0 series which is 5.0f. I found the commit[1] where REVISION was bumped to 'f'. The git log messag

Bug#1029202: snippy: Error when using snpeff 5.1

2023-01-25 Thread Andreas Tille
Hi Pierre, given that this bug might be quite invasive to a couple of rdepends do you think it makes sense to upload some 5.1+d+dfsg+really+5.0 named copy of version 5.0? At least if upstream might need some time to respond? We might also turn your example into an autopkgtest to avoid futur

Bug#1029202: snippy: Error when using snpeff 5.1

2023-01-21 Thread Andreas Tille
Hi Pierre, Am Sat, Jan 21, 2023 at 10:00:32AM +0100 schrieb Pierre Gruet: > I will provide the upstream of snpeff with a minimal non-working example, as > I am unfortunately not able to understand it myself. Thanks a lot, that's actually the help I was hoping for Andreas. PS: Please add t

Bug#1029202: snippy: Error when using snpeff 5.1

2023-01-19 Thread Andreas Tille
Package: snippy Version: 4.6.0+dfsg-1 Severity: important X-Debbugs-Cc: Pierre Gruet Hi, I was informed that snippy is not behaving nicely in all cases when snpeff 5.1 is used. A colleague is rather using it successfully with snpeff 5.0. You can verify this with the following test script: #!