g-python works if libbiosig is
available on the system, in which case one needs to do only
pip install numpy pkgconfig
pip install Biosig-1.9.1.tar.gz
where Biosig-1.9.1.tar.gz is just built in python/dist with this command:
cd python && make release
I provide the sources also here
https:
The severity of this bug should be changed to minor for the following
reason(s):
The symbol being lost is not from the API of biosig, and no application
using libbiosig could have used it in a meanigful way.
The missing symbol
_cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEE
Package: pymol
Version: 2.2.0
Severity: wishlist
The open source version of Pymol 2.2.0 is available from here now:
https://github.com/schrodinger/pymol-open-source
https://github.com/schrodinger/pymol-open-source/releases
It seems, debian/watch file is not aware of this new releas
I confirm that this bug occurs under some specific conditions.
For testing I used this file
http://www.pdb.org/pdb/files/1bl8.pdb
which works fine on a local installation of pymol (Debian/Stretch).
It works also when connecting to OSX (through xquartz 2.7.12 with "ssh
-Y " to a Debian/Jessie ser
On 2017-06-27 15:15, Daniel Pocock wrote:
>
>
> On 27/06/17 14:58, Alois Schloegl wrote:
>> Package: ganglia-web
>>
>>
>> The following ganglia packages are installed:
>>
>> ganglia:~# dpkg -l|grep ganglia
>> ii ganglia-modules-linux
Package: ganglia-web
The following ganglia packages are installed:
ganglia:~# dpkg -l|grep ganglia
ii ganglia-modules-linux 1.3.6-2
amd64Ganglia extra modules for Linux (IO, filesystems,
multicpu)
ii ganglia-monitor 3.6.0-7+b1
amd64
This bug was fixed upstream in
commit 8e7c3d7e485e1d3af3f3094641282274424b7385
Attaches is the corresponding patch.
Thanks for consideration,
Alois
commit 8e7c3d7e485e1d3af3f3094641282274424b7385
Author: Christoph Schmidt-Hieber
Date: Sat Dec 10 16:50:41 2016 +0100
Fix compilation
Package: libthrust-dev
Version: 1.7.0
Severity: normal
Dear Maintainer,
I tried to compile and run relion 2 beta with cuda enable.
nvidia-cuda-toolkit
7.5 from debian8/backports is installed on that machine.
When testing the application, it crashed with a segmentation fault.
The issue is also
GES="en_US.UTF-8"
LC_PAPER="en_US.UTF-8"
LC_NAME="en_US.UTF-8"
LC_ADDRESS="en_US.UTF-8"
LC_TELEPHONE="en_US.UTF-8"
LC_MEASUREMENT="en_US.UTF-8"
LC_IDENTIFICATION="en_US.UTF-8"
LC_ALL=
Test 0: preparation ###
On 2016-03-31 20:30, Luca Boccassi wrote:
> On Thu, 2016-03-31 at 18:23 +0200, Alois Schloegl wrote:
>> At the beginning, I used the .run installer, but thought to have cleaned
>> this up. Obviously, this was not the case. The are a few more files
>> installed on Sep 10 (
On 03/31/2016 04:12 PM, Andreas Beckmann wrote:
> On 2016-03-31 11:46, Alois Schloegl wrote:
>> I'm trying to get Cuda working on debian/jessie. When running
>> nvidia-smi, dmesg shows this message:
>>
>> [ 2355.945623] NVRM: API mismatch: the client has the v
In order to fix the installation of glx-alternative-nvidia, and fix some
other cuda related issues, I tried to update cuda to jessie-backports.
The update did not work out of the box, e.g
After uninstalling nvidia-cuda and reinstallung with
apt-get -t jessie-backports install nvidia-cuda-tool
I was able to revert to a working state of cuda 6.5, by using dpkg -i
and the packges in /var/cache/apt/archives. Below are the output of
nvidia-smi and the gpuinfo test program.
The package list is attached in "pkglist.nvidia.working.txt".
Configuration of glx-alternative-nvidia failed with this
On 2016-02-29 16:08, lumin wrote:
> Hi,
>
> Thank you for reporting this bug.
>
> It seems like a GCC ABI issue, rather than that of CUDA
> or nvidia-driver.
> If the nvidia-driver package ships binary then they are
> linked by GCC-5, which requires an different ABI to
> the one of Jessie. Hence
Package: nvidia-cuda-toolkit
Version: 7.0.28-4
Severity: important
Dear Maintainer,
I tried to upgrade the nvidia-drivers from 352.41-1
to the current version "352.79-3" and nvidia-cuda-toolkit to a matching
version, cuda became unusable. Rebooting the machine did not help.
I used the follow
Package: octave-plplot
Version: 5.10.0+dfsg-1
Severity: normal
Tags: patch
I've tryied to use plplot from Octave on Jessie. Octave and
octave-plplot are installed. Starting octave and running
"toggle_plplot_use cases the following problem:
octave:1> use_plplot
This function is deprecated. Use
On 2015-07-16 07:00, Mike Miller wrote:
> On Wed, Jul 15, 2015 at 08:59:32 -0400, Mike Miller wrote:
>> On Wed, Jul 15, 2015 at 10:00:33 +0200, Alois Schloegl wrote:
>>> Octave should not have a strong dependency on openjdk. Any of the
>>> following solutions would do:
&
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Recently, I tried to remove openjdk-[6-8] from a number of machines
because of the large number of open security issues with openjdk
(currently there are 23, 21 and 20 open security issues on openjdk-6,
openjdk-7, and openjdk-8, resp.). I learned t
The attached patch should address this issue. The patch is essentially this
commit af73e397da01a4f70c01387f284e87262e42e7a3
Author: Dave Love
Date: Thu Apr 21 12:44:36 2011 +
Introduce lUlong64 to fix wrong vmem reporting on 64-bit GNU/Linux
(from Univa)
from http://arc.liv.ac.uk/r
The same bug has been already reported against liboctave-dev
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=705485
This bug report can be merged.
Alois
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> In file included from /usr/include/octave-3.6.2/octave/mexproto.h:52:0,
> from /usr/include/octave-3.6.2/octave/mex.h:77,
> from mexSLOAD.cpp:15:
> /usr/include/c++/4.8/cstdlib: In function 'long long int std::abs(long long
> int)':
> /usr/include/c++/4.8/cstd
Package: pdftk
Version: 1.44-7
Severity: Wishlist
I got an pdf file that could not be opened with pdftk.
pdftk /tmp/q.pdf data_dump
Error: Failed to open PDF file:
/tmp/q.pdf
Done. Input errors, so no output created.
Unfortunately, the file contains personal information, so I can not
sha
ecision
numbers resulting in 4.8GB memory need.
- the script for submission to the grid engine
qsub memtest03.m
The e.mail report contains this:
Job 4709696 (MEMTEST02) Complete
User = schloegl
Queue= mai...@nick13.ista.local
Host = nick13.ista.local
Start Tim
On 06/30/11 04:11, Jordi Gutiérrez Hermoso wrote:
On 29 June 2011 18:54, wrote:
On Tue, Jun 28, 2011 at 09:03:32AM +0200, Alois Schloegl wrote:
adding -lgomp to mkoctfile call does not do it. And I've not found
any another option to enable openmp at this stage.
Did you pass -fopenmp t
> On Tue, Jun 28, 2011 at 09:03:32AM +0200, Alois Schloegl wrote:
>> adding -lgomp to mkoctfile call does not do it. And I've not found
>> any another option to enable openmp at this stage.
>
> Did you pass -fopenmp to the compiler?
>
> Thomas
>
I t
On 06/27/11 20:23, Thomas Weber wrote:
Hi Alois,
On Mon, Jun 27, 2011 at 05:30:18PM +0200, Alois Schloegl wrote:
Package: octave3.2
Severity: wishlist
Octave should be configured with --enable-openmp. This would enable
the use of multiple cpus.
https://mailman.cae.wisc.edu/pipermail/octave
Package: installation-reports
Boot method: CD
Image version:
http://cdimage.debian.org/cdimage/daily-builds/daily/arch-latest/i386/iso-cd/
Date: GMT+1
Machine: Asus EeePC 1008PGO
Processor: Atom N450
Memory: 1 GB
Partitions:
[default settings, single partition]
# df -Tl
FilesystemType
Package: xserver-xorg-video-mga
Version: 1.9.100.dfsg.1-1
Severity: normal
Hi,
After expanding the desktop to both screens by command line
"xrandr --output VGA2 --right-of VGA1" the mouse pointer isn't
visible when the mouse is moved into VGA2.
It's possible to move windows into VGA2, even le
Original-Nachricht
Datum: Mon, 16 Apr 2007 21:38:12 +0200
Von: Thomas Weber <[EMAIL PROTECTED]>
An: Alois Schloegl <[EMAIL PROTECTED]>, [EMAIL PROTECTED]
Betreff: Re: [Pkg-octave-devel] Bug#419556: ambigous results in matrix
multipliication
> Hi,
>
>
Package: Octave2.9
Status: install ok installed
Priority: optional
Section: math
Installed-Size: 26220
Maintainer: Debian Octave Group <[EMAIL PROTECTED]>
Architecture: i386
Version: 2.9.10-3
Severity: Important
One expects that a matrix multiplication (A*B)' gives the same result than for
(B'*
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