reported there if someone has
the energy/will to do that.
regards
Afif
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e for Debian is limited at the moment, but I'm not standing in the
way of team members (or non-team members) who wish to push this in.
thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
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m builds anyway.
Does this mean SGE is being revived?
thanks and regards
Afif
1. https://bugs.debian.org/875404
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nks and regards
Afif
--
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uested team access via Salsa.
>
Hello,
I'm not involved with the package, but I've granted you access and any
help is welcome as far as I'm concerned.
thanks and regards
Afif
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Afif Elghraoui | عفيف الغراوي
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oid stress on our infrastructure until this bug is fixed.
>
This bug has been fixed for about a week now but nvchecker still appears
to be blocked from debci. Does that need to be manually changed? I
expected it to be removed automatically once the bug was closed.
thanks and regards
Afif
--
On 9/26/21 1:37 PM, Andreas Tille wrote:
> Hi Afif,
>
> On Sun, Sep 26, 2021 at 01:20:34PM -0700, Afif Elghraoui wrote:
>>> My guess is that also other packages than python3-drmaa will profit from
>>> this.
>>
>> The thing is that gridengine is not the
it seems to be the only one in current Debian releases. If we
wanted to do this right, I think we'd need to get a virtual package for
libdrmaa that gridengine and, for example, slurm could both provide.
thanks and regards
Afif
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DPMT
>
I'd have been happy to, but at the time, DPMT was using git-dpm and it
didn't seem worth learning to use an unmaintained tool just to package a
couple of python modules.
Thanks and regards
Afif
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Afif Elghraoui | عفيف الغراوي
https://afif.ghraoui.name
th-desktop/issues/328#issuecomment-513132914
>
Since the package is team-maintained, I think it'd be easier for you to
just join the team and continue maintaining the package as part of it.
In this case, I don't think an ITS is necessary and you could just do a
team upload.
thanks and regar
Control: forwarded -1 https://github.com/lilydjwg/nvchecker/issues/109
On July 2, 2019 2:50:00 PM EDT, Paul Gevers wrote:
>Source: nvchecker
>Version: 1.3-2
>Severity: important
>X-Debbugs-CC: debian...@lists.debian.org
>User: debian...@lists.debian.org
>Usertags: regression
>
>Dear maintainers,
On June 28, 2019 5:00:00 AM EDT, Ivo De Decker wrote:
>Hi,
>
>On Thu, Jun 27, 2019 at 09:30:09AM -0400, Afif Elghraoui wrote:
>> On June 27, 2019 9:06:41 AM EDT, Afif Elghraoui
>wrote:
>> >
>> >
>> >On June 27, 2019 5:47:28 AM EDT, Ivo De Decker
Control: reopen -1
On June 27, 2019 9:06:41 AM EDT, Afif Elghraoui wrote:
>
>
>On June 27, 2019 5:47:28 AM EDT, Ivo De Decker
>wrote:
>>Hi,
>>>
>>> So I think the two options we have is (in order of preference): 1.
>>> unblock singularity-
Control: tag -1 - moreinfo
On June 25, 2019 4:16:17 PM EDT, Salvatore Bonaccorso wrote:
>Hi Paul, hi Afif,
>
[...]
>>
>> Your proposed changes very much do not align with the freeze policy,
>so
>> you're asking for an exception for a new upstream release. This
>package
>> is currently listed to
Hello,
Is any help needed on this? Upstream has a backport of the patch for the
18.09 series (same as Unstable):
https://github.com/docker/engine/pull/253
Hopefully it won't be too much work to incorporate it.
thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
e...@lists.debian.org might get lost
and it'd be weird to file a bug on release.debian.org asking to apply a
tag to another bug.
Again, I think it makes more sense to just lower the severity if you
don't think it should affect the release.
regards
Afif
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Afif Elghraoui | عفيف الغراوي
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Control: tag -1 - moreinfo
Hello,
The package just passed NEW today, so should be ready to go.
thanks and regards
Afif
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Hello,
على ٧/٧/١٤٤٠ هـ ٥:٢٢ م، كتب Raphael Hertzog:
> Hello Afif,
>
> sorry for the delay.
I read your reply before and put it aside for later, but reading it
again now, I have a comment--
>
> On Sun, 03 Feb 2019, Afif Elghraoui wrote:
>> The way I was hoping th
permissible under these circumstances.
>
Thanks for following up.
regards
Afif
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Afif Elghraoui | عفيف الغراوي
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he probably never saw these messages. I'm
just checking in here as a concerned maintainer of a reverse-dependency
threatened with autoremoval.
thanks and regards
Afif
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=927189
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Afif Elghraoui | عفيف الغراوي
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On May 15, 2019 5:13:24 PM EDT, Salvatore Bonaccorso wrote:
>Hi Afif,
>
>On Wed, May 15, 2019 at 10:57:49PM +0200, Salvatore Bonaccorso wrote:
>> Then there is nothing further to be done.
>
>Oh, actually there is an open point: Is it confirmed that 3.0.3 is not
>affected by the CVE? Did you got
this will hopefully be moot if we can unblock the version
now in Unstable.
regards
Afif
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my reason for making it had nothing to do with this CVE.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
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On February 8, 2019 7:59:10 PM EST, Santiago Vila wrote:
>> It looks like a network access problem. The whole point of this
>> package is to check online sources, so it's hard to test it without
>> network access. I was able to build it just fine in my schroot, but I
>> may have to disable the
Hello,
On February 8, 2019 7:15:55 PM EST, Santiago Vila wrote:
>Package: src:nvchecker
>Version: 1.3-1
>Severity: serious
>Tags: ftbfs
>
>Dear maintainer:
>
>I tried to build this package in buster but it failed:
>
>
Hi, nicoo!
Good to hear from you.
On February 7, 2019 4:26:13 PM EST, Nicolas Braud-Santoni
wrote:
>On Sat, Feb 02, 2019 at 10:27:33PM -0500, Afif Elghraoui wrote:
>> I've prepared an NMU for yubikey-manager (versioned as 2.0.0-0.1) and
>> uploaded it to DELAYED/7. Please
ine/commit/ac79ef75c32e5faf96c5ca8c618955d4c72ffd61
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emoved, leaving only Simon Josefsson.
regards
Afif
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على ٢٨/٥/١٤٤٠ هـ ١:٥٧ ص، كتب Afif Elghraoui:
> Control: subscribe -1 !
>
silly me--- I mistook this for a control command since I usually use
devscripts' `bts subscribe ...`.
Never mind my previous message and apologies for the noise.
regards
Afif
--
Afif Elghraoui | عفيف ا
of you way, I'd be willing to implement a patch, but would
appreciate a tip about where to look in the code-base. I looked around
it and couldn't find a good starting point in the file hierarchy.
thanks and regards
Afif
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على ٢٠/٥/١٤٤٠ هـ ٨:٣٥ م، كتب Afif Elghraoui:
> Hello,
>
> Is anyone about to update this package or is any help needed? The
> current upstream version is now 2.0.0.
>
There have been three new upstream releases since the last upload of
this package that add support for the
Package: ftp.debian.org
Severity: normal
singularity-container was recently rewritten in Go and this new code base
is not building on the named architectures. I'd like to prevent this
situation from blocking migration to Testing.
thanks and regards
Afif
Hello,
Is anyone about to update this package or is any help needed? The
current upstream version is now 2.0.0.
regards
Afif
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Afif Elghraoui | عفيف الغراوي
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Package: wnpp
Severity: wishlist
Owner: Afif Elghraoui
* Package name: nvchecker
Version : 1.3
Upstream Author : lilydjwg
* URL : https://github.com/lilydjwg/nvchecker
* License : MIT
Programming Lang: Python
Description : new-version checker for
t [2].
1. https://salsa.debian.org/hpc-team/gridengine/tree/java10
2. https://arc.liv.ac.uk/trac/SGE/ticket/1642
--
Afif Elghraoui | عفيف الغراوي
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Package: singularity-container
Version: 2.4-1
Severity: normal
Control: forwarded -1 https://github.com/sylabs/singularity/issues/1271
$ singularity exec docker://busybox whoami
Docker image path: index.docker.io/library/busybox:latest Cache folder set to
/home/hayashis/.singularity/docker Creat
a stable release.
1. https://bugs.debian.org/898154
2. https://lists.debian.org/debian-hpc/2018/12/msg00029.html
3. https://www.sylabs.io/singularity/
--
Afif Elghraoui
على ٢٣/٢/١٤٤٠ هـ ١١:٠٤ م، كتب Michael Hudson-Doyle:
On Fri, 2 Nov 2018 at 15:30, Afif Elghraoui <mailto:a...@debian.org>> wrote:
على ٢٣/٢/١٤٤٠ هـ ٩:٥٣ م، كتب Michael Hudson-Doyle:
> I don't understand this change:
>
https://salsa.debian.org/m
the test suite would return True if
successful, which translated into an exit code of 1 and interpreted as
failure. I don't know whether that's still the case.
regards
Afif
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Afif Elghraoui | عفيف الغراوي
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Package: ftp.debian.org
Severity: normal
The latest upstream commit is from late 2016 [1]. The RC bug related to openssl
1.1 has never been addressed [2,3].
regards
Afif
1. https://bitbucket.org/orifs/ori/commits/all
2. https://bugs.debian.org/828481
3. https://bitbucket.org/orifs/ori/issues/
على ٣/٢/١٤٤٠ هـ ٤:٣٣ م، كتب Moritz Mühlenhoff:
On Fri, Oct 13, 2017 at 12:52:55AM -0400, Afif Elghraoui wrote:
What's the status? ori hasn't been uploaded since 21 months, is there
any progress?
There's been no development activity upstream since then either. I thi
s as
part of it and do this today.
regards
Afif
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Afif Elghraoui | عفيف الغراوي
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Hello,
On September 12, 2018 5:30:59 AM EDT, Andreas Tille wrote:
>Hi Alex,
>
>On Wed, Sep 12, 2018 at 10:55:20AM +0200, Alex Mestiashvili wrote:
>> Well, according upstream, current repository is not active anymore:
>>
>>
>> Oh, sorry. We are no longer mirroring our internal FALCON repo here.
On July 9, 2018 12:18:06 PM EDT, "Adam D. Barratt"
wrote:
>On 2018-07-09 04:16, Afif Elghraoui wrote:
>> على الأحد 8 تـمـوز 2018 14:38، كتب Adam D. Barratt:
>>>
>
>I've filed #903406 with a small patch that at least builds successfully
>
>
at the gridengine build system wasn't looking in the right place
anymore and thought the java team would know more about it. I didn't
pursue it further, though.
regards
Afif
1. https://lists.debian.org/debian-java/2017/12/msg00050.html
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على السبت 7 تـمـوز 2018 07:35، كتب Adam D. Barratt:
> With the above change, please feel free to upload.
Uploaded. I hope source-only is fine.
Thanks and regards
Afif
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defined in debian/manpages,
but is created during the package build. I've worked around that, but
it's still curious why the error is not consistent without `-B`.
regards
Afif
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)
+
+ -- Afif Elghraoui Thu, 05 Jul 2018 00:38:58 -0400
+
gridengine (8.1.9+dfsg-4) unstable; urgency=low
* Patch upstream source to declare prerequisites for pdc (Closes:
#846770)
diff --git a/debian/gridengine-qmon.install b/debian/gridengine-qmon.install
index 99b6cf17d..59ddc17f0 100644
/debian-hpc/2018/06/msg00021.html
>From c416d2f88fa6ee1518d95e37a65856c571994bc0 Mon Sep 17 00:00:00 2001
From: Afif Elghraoui
Date: Sun, 11 Mar 2018 17:07:27 -0400
Subject: [PATCH] Use correct paths to qmon pixmaps
Closes: #892296
---
debian/gridengine-qmon.install | 2 +-
debian/grideng
On June 26, 2018 3:45:49 AM EDT, Andreas Tille wrote:
>On Mon, Jun 25, 2018 at 09:52:50AM -0400, Afif Elghraoui wrote:
>> I think we can give 1.5.0 a try, but it might have the same problem.
>
>Since it builds successfully I've just uploaded.
>
Ok
>> > (A
On June 25, 2018 5:07:48 AM EDT, Andreas Tille wrote:
>Hi Afif,
>
>On Mon, Jun 25, 2018 at 03:41:11AM -0400, Afif Elghraoui wrote:
>> >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced:
>> >/tmp/tmpveTAsa.subreadset.xml
>> >
>> >Before I sta
Hi, Andreas
On June 25, 2018 3:32:00 AM EDT, Andreas Tille wrote:
>Hi Graham,
>
>On Sun, Jun 24, 2018 at 08:48:32PM +0200, Graham Inggs wrote:
>> Control: tags -1 + patch
>
>thanks for the patch. Since we are targeting in Git at version 1.4.2 I
>adapted the patch to this version and it works for
either, and the lack of an updated build on mips is now preventing
migration to testing.
Thanks and regards
Afif
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Control: tag -1 + confirmed
Hi, Yaroslav,
>
>Thanks for maintaining and updating the package through the latest
>releases.
>But I wondered -- since you also had similar (minor but still) pains --
>could
>we retain/maintain compatibility with previous versions of debhelper,
>e.g. 10
>(or even bet
On February 14, 2018 7:04:32 AM EST, Andreas Henriksson
wrote:
>
>Would be great if you could have this fixed ASAP. If you're busy
>feel free to just ask for help with a non-maintainer upload in
>the meantime and I'll make it happen.
>
For me, that would be maybe tomorrow night. I have no prob
s.
If that's no problem to you, we can go ahead and make it happen.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
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Package: wnpp
Owner: Afif Elghraoui
Severity: wishlist
* Package name: assemblytics
Version : 0~20170131
Upstream Author : Maria Nattestad
* URL : http://assemblytics.com
* License : MIT
Programming Lang: Python, R
Description : detect and analyze
these architectures in Unstable
will still prevent migration once the time limit elapses [1].
Thanks and regards
Afif
https://qa.debian.org/excuses.php?package=hinge
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Package: wnpp
Owner: Afif Elghraoui
Severity: wishlist
* Package name: swiglpk
Version : 1.4.4
Upstream Author : The Novo Nordisk Foundation Center for Biosustainability
* URL : https://github.com/biosustain/swiglpk
* License : GPL
Programming Lang: Python
oad a new version first.
I already did an upload before filing this bug, so it's now showing as
BD-Uninstallable on i386.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
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Package: wnpp
Owner: Afif Elghraoui
Severity: wishlist
* Package name: optlang
Version : 1.3.0
Upstream Author : Novo Nordisk Foundation Center for Biosustainability
* URL : http://optlang.readthedocs.org/
* License : Apache
Programming Lang: Python
Package: ftp.debian.org
Severity: normal
The package would not migrate to testing because it was not installable
on i386 for lack of sse-support.
Thanks and regards
Afif
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Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Hello,
On December 22, 2017 9:14:14 PM EST, Thomas Lange
wrote:
>Are apt-get and apt are also affected by the different behaviour when
>using -t release or package/release?
>
That is how they behave, and your treating them as equivalent is the problem.
>You may want to ask the apt maintainers
Hi, Andreas,
On December 11, 2017 8:32:53 AM EST, Andreas Tille wrote:
>Hi Afif,
>
>this message and the previous one hit me in a time of beeing busy with
>other stuff. I've removed the files in question now and closed the
>bug.
>
>Kind regards
>
>Andreas.
>
>PS: You can always feel free
Hi, Andreas,
On December 11, 2017 6:55:17 AM EST, Andreas Tille wrote:
>Hi Afif,
>
>there is a new upstream version which I intended to give a chance
>whether this issue might be fixed. Unfortunately the get-orig-source
>script fails - somehow the submodules are not cloned properly.
>
>Before I'
On December 1, 2017 9:12:19 PM EST, Steve Langasek
wrote:
>On Fri, Dec 01, 2017 at 03:37:47AM -0500, Afif Elghraoui wrote:
>> I believe this is
>primarily
>> an issue with wanna-build queuing the package for building on those
>> architectures to begin with [1].
>
&
Hi, Steve,
On November 29, 2017 12:50:55 AM EST, Steve Langasek
wrote:
>In Ubuntu, we observed that the canu package was not releasable because
>it
>generates per-architecture binary packages with a transitive dependency
>on
>libssw-java, which is only available on amd64.
>
>To work around this
Hi, Andreas,
I'm not sure if you saw my message below when I sent it originally. I'd
appreciate if you could take a look at this issue.
regards
Afif
على الثلاثاء 14 تشرين الثاني 2017 10:10، كتب Afif Elghraoui:
> Hi, Andreas,
>
> On November 14, 2017 7:08:59 AM EST, John
gt;bcftools (1.5-1~exp1) experimental; urgency=medium
>
> [ Afif Elghraoui ]
> * Update packaging for new build system
>[snip]
>-- Afif Elghraoui Mon, 07 Aug 2017 20:06:52 -0400
>
>
Would you mind reverting the problematic changes to the htslib packaging to
resolve this issue
On November 13, 2017 2:43:16 PM EST, ow...@bugs.debian.org wrote:
>Processing commands for cont...@bugs.debian.org:
>
>> # Raising the severity of bugs which are blocking the removal of
>> # libssl1.0.2 which we want gone for Buster.
>> # https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=871056#5
On November 9, 2017 6:20:03 PM EST, Diane Trout wrote:
>
[...]
>
>Anyone want to review? or should I go ahead and release?
>
I think you can release. However, it appears the changelog wasn't updated in
git since the last upload [1] you'll need to go for a 1.5-3.
regards
Afif
1.
http://m
On November 9, 2017 3:06:32 AM EST, Mattia Rizzolo wrote:
>On Wed, Nov 08, 2017 at 04:58:49PM -0800, Diane Trout wrote:
>> > > I was wondering if we should split the cram headers into a
>> > > libhts-private-dev so we can at least track what is depending on
>> > > the
>> > > non-public api.
>
>C
On November 9, 2017 2:32:56 AM EST, Diane Trout wrote:
>On Thu, 2017-11-09 at 02:03 -0500, Afif Elghraoui wrote:
>> > - TODO Split private cram headers off into a new libhts-private-dev
>> > package
>>
>> I'd rather be in favor of restoring the bundled
Hi, Diane,
Thanks for working on this.
On November 8, 2017 7:58:49 PM EST, Diane Trout wrote:
>One of the htslib developers filed a new bug,
>
>https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=881170
>
>asking us to not make their private libraries public. His suggestions
>are fairly similar t
gt; if Debian would start by running "git log -S symbolname" which will
> usually provide an explanation, rather than assuming that something
> terrible has happened.
regards
Afif
1. https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=822701#56
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على الجمعـة 27 تشرين الأول 2017 09:55، كتب Mattia Rizzolo:
> On Fri, Oct 27, 2017 at 12:52:31AM -0400, Afif Elghraoui wrote:
[...]
>
> What would have been good to prevent the current breakage that has been
> brought to my attention (samtools), what happened is that the newest
priate for the 1.4 release if I remember
correctly. That's all I can say about this; I don't actually work on the
htslib packaging myself.
regards
Afif
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Afif Elghraoui | عفيف الغراوي
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Hi, Diane,
On October 26, 2017 1:41:30 PM EDT, "Trout, Diane E." wrote:
>The new version of pysam 0.12 requires libhts2 1.5.
>
>Unfortunately pysam 0.12 just migrated to testing, and libhts2 was
>blocked from migrating by this bug because it breaks pysam 0.11
>
>
Oh, yeah, that should be closed.
Package: wnpp
Severity: wishlist
Owner: Debian Med Team
Control: block 878962 by -1
Control: block 878963 by -1
* Package name: python-easydev
Version : 0.9.35
Upstream Author : Thomas Cokelaer
* URL : https://easydev-python.readthedocs.io/en/latest/
* License
Package: wnpp
Severity: wishlist
Owner: Debian Med Team
Control: block 878962 by -1
* Package name: python-colormap
Version : 1.0.1
Upstream Author : Thomas Cokelaer
* URL : https://colormap.readthedocs.io/
* License : BSD
Programming Lang: Python
Descripti
Package: wnpp
Severity: wishlist
Owner: Debian Med Team
* Package name: hinge
Version : 0.5
Upstream Author : Govinda Kamath,
Fei Xia,
Ilan Shomorony,
Thomas Courtade, and
David Tse
* URL :
act before that happens.
>
> [0] https://bugs.debian.org/871056#55
>
I've just followed up with upstream, who would actually like to remove
the dependency on openssl altogether.
regards
Afif
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. It'd also be extremely helpful if you could forward your patch upstream.
Many thanks and regards
Afif
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.7
> package. Your package is on said list.
>
> So for the new python2.7 to migrate to testing the FTBFS in python-pysam
> needs to be fixed.
Okay, I've just skipped that one failing test and uploaded the new
version in order to move things along.
regards
Afif
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على السبت 30 أيلول 2017 16:43، كتب Afif Elghraoui:
> I'll see if I can do it today,
I see Andreas Tille is on top of this. The current issue right now is
this upstream bug we encounter when trying to build the latest upstream
version:
https://github.com/pysam-developers/pysam/is
ting some of its other dependencies
(htslib/samtools).
regards
Afif
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http://afif.ghraoui.name
message. I'm therefore
reassigning this ticket to the passwd package, which is where userdel
comes from. You should hear from its maintainers as a result.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
gning back, as I did here, will allow its closure
to properly notify the submitters that the problem they encountered is
resolved.
Let me know if there are further issues.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Hello, all,
I was experiencing this problem and was able to get around it by
additionally passing `--no-systemd-networkd --enable-dhcp` to vmdebootstrap.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Hi, Emmanuel,
Would you mind if I NMU the package to update to the latest upstream, as
well as move the git repository to collab-maint?
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
TP at a later time)
>
The last I heard, he had joined the Debian Science alioth group, but I
didn't follow-up either.
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Hi, Liang,
Thanks for the report. I suspect there are other tools that expect
SGE_ROOT to be defined globally as well. I'll have to see about whether
they should not expect this or whether these variables should just be
defined globally.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
Hi, Sergey,
على السبت 8 تـمـوز 2017 07:11، كتب Sergey B Kirpichev:
> On Mon, 20 Feb 2017 22:03:19 -0800 Afif Elghraoui wrote:
>> Anyway, I see the packaging is still in SVN. I'll switch it to Git and
>> prepare a team upload.
> Please ask first other co-maintainers!
>
nds, but I don't think this will mean much for falcon.
>> I'll open a new (non-RC) bug to make it visible that this is
>> an issue that should be investigated properly.
>
> Thanks a lot for your last minute rescue action. I'll commit your
> changes to Git (h
any actual use (de novo genome
assembly), it will require more memory than would be addressable on a
32-bit system. It's not really worth the time and effort to debug that.
I don't know of an alias like !32bit for the Architecture field in
debian/control to exclude that.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
ekend) and report back.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
7;. I made patches for some of those, but I haven't
gotten around to setting up a testing environment to verify them and my
spare time has been extremely limited.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Hi,
على الإثنين 3 نيسـان 2017 17:31، كتب Patrik Schindler:
>
> Perhaps this is a sight duplicate to Bug 36019?
>
I don't think so. 36019 could be said to be a blocker for this one, though.
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
or a while. It involved packaging some other Ensembl APIs
and seems to be difficult to keep up with.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
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