>- Original Message -
>From: "Michael Brown"
>To: "Beowulf Mailing List"
>Sent: Tuesday, February 10, 2009 3:52:04 PM GMT -05:00 US/Canada Eastern
>Subject: Re: [Beowulf] itanium vs. x86-64
>
>node. Hopefully, with the Nehalem and Tukwila sharing the same socket we
>might be ab
Tiago Marques
> I've been trying to get the best performance on a small cluster we
have here
> at University of Aveiro, Portugal, but I've not been enable to get most
> software to scale to more than one node.
> The problem with this setup is that even calculations that take more
than 15
> da
2009/2/13 Tiago Marques :
>
> As for software, I'm using Gentoo Linux, ICC/IFC/GotoBLAS, tried scalapack
> with no benefit, OpenMPI and Torque, running in x86-64 mode.
>
Pallas/PMB, or there are test programs included with OpenMPI which
measure performance.
___
Hi Tiago,
> I tried with Gromacs ...
Concerning your MD tests, would it be worthwhile to check also NAMD's
parallel efficiency ? Based on past experience, I would suggest that you
try both the UDP- & TCP-based versions (don't forget to use the +giga and
possibly the +atm flags). Also, kee
