Re: [Beowulf] Question about list

2007-11-21 Thread Donald Becker
On Thu, 22 Nov 2007, Jeffrey B. Layton wrote: > A quick question about the list. Can I post job openings to the list or > is that in bad taste? It's in bad taste. I tolerate it only for prolific posters, but anything beyond a short trailing note at the end of a long technical post is likely to

Re: [Beowulf] Teaching Scientific Computation (looking fo the perfect text)

2007-11-21 Thread Geoff Jacobs
David Mathog wrote: Operator overloading reminds me of Bill Clinton's: "It depends what the meaning of 'is' is." If operator overloading is used unwisely, so that the meaning of "+" is not just "addition of this type of data", then pity the poor schmuck who has to maintain the code. Unfortunat

Re: [Beowulf] Software RAID?

2007-11-21 Thread Joe Landman
Ekechi Nwokah wrote: Hi, Does anyone know of any software RAID solutions that come close to the performance of a commodity RAID card such as LSI/3ware/Areca for direct-attached drives? For small numbers of drives, yes, the MD driver is superb with two (well, really three) caveats. First: N

[Beowulf] Tips for diagnosing intermittent problems on a small cluster

2007-11-21 Thread stephen mulcahy
Hi, As I mentioned in my previous posting, the 20 node Tyan S2891 Dual Opteron dual core Debian cluster (1 NFS providing head node, 19 diskless compute nodes) is currently experiencing 2 intermittent problems which I'm trying to diagnose. After a few days of testing and digging through syste

[Beowulf] I/O workload of an application in distributed file system

2007-11-21 Thread Qiuye Wang
Hello list, i was trying to find some info about the i/o-access of secondary storage of applications, which uses the distributed file system. And it seems that it's not the popular topic. I've found a paper about penguinometer, there is some discriptions about the access specification of some ap

Re: [Beowulf] Teaching Scientific Computation (looking fo the perfect text)

2007-11-21 Thread Stephen Hocking
All, Regarding the Matlab vs Octave debate, has anyone looked at Scilab? It has signal processing toolkits, ode solvers and a few other add-ons that might be of interest. Also does decent graphics & animations. Stephen ___ Beowulf mailing list, Beo

Re: How bleeding edge are people with kernels (Was Re: [Beowulf] impressions of Super Micro IPMI management cards?)

2007-11-21 Thread stephen mulcahy
Brian Dobbins wrote: I had at one point a simple script that would allow me to select a kernel type at job submit time, it would load that up, reboot the nodes with that kernel, and then run my job. Sometimes this was incredibly useful, as I found a difference of roughly 20-25% performance

Re: [Beowulf] Software RAID?

2007-11-21 Thread Michael Will
Except that swraid does usually not support hotswap replacing of a failed drive without interrupting the server's current workload and without an admin logging in and doing some risky mdadm / scsidriver surgery. Michael Sent from my GoodLink synchronized handheld (www.good.com) -Origin

Re: [Beowulf] Software RAID?

2007-11-21 Thread Mark Hahn
performance of a commodity RAID card such as LSI/3ware/Areca for direct-attached drives? Yes. Of course there's a factor of 10 or more in the various cards offered by those vendors. Adaptec is another popular brand. I've had good luck with recent 3ware, and heard Areca is good. both LSI and

Re: [Beowulf] Software RAID?

2007-11-21 Thread Mark Hahn
Does anyone know of any software RAID solutions that come close to the performance of a commodity RAID card such as LSI/3ware/Areca for direct-attached drives? yes, MD, the standard Linux software raid, is generally faster than HW raid. yes, this can be argued, though not in any kind of slam-

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Jim Lux
Quoting "Robert G. Brown" <[EMAIL PROTECTED]>, on Wed 21 Nov 2007 07:36:43 AM PST: On Wed, 21 Nov 2007, Jim Lux wrote: Quoting "Robert G. Brown" <[EMAIL PROTECTED]>, on Wed 21 Nov 2007 05:56:51 AM PST: On Tue, 20 Nov 2007, Jim Lux wrote: Octave is nice, but the graphics are MUCH be

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Jim Lux
Quoting "Robert G. Brown" <[EMAIL PROTECTED]>, on Wed 21 Nov 2007 06:47:16 AM PST: On Tue, 20 Nov 2007, Joshua Baker-LePain wrote: You do raise an interesting question. Would one student running an application on N machines need N copies under their academic student license? Almost c

Re: [Beowulf] Joe Blaylock's notes on running a MacOS cluster, Nov. 2007

2007-11-21 Thread Greg Lindahl
On Wed, Nov 21, 2007 at 07:17:27PM -0500, Robert G. Brown wrote: > Making it time for .. THANKSGIVING BREAK! Darn, I was figuring you were going to answer, "But EVERYONE wants to hear my theories!" I mean, that's what *I* think... -- g ___ Beowulf mai

Re: [Beowulf] Software RAID?

2007-11-21 Thread Bill Broadley
Ekechi Nwokah wrote: Hi, Does anyone know of any software RAID solutions that come close to the Yes, better even. performance of a commodity RAID card such as LSI/3ware/Areca for direct-attached drives? Yes. Of course there's a factor of 10 or more in the various cards offered by those ve

Re: [Beowulf] Teaching Scientific Computation (looking fo the perfect text)

2007-11-21 Thread Robert G. Brown
On Wed, 21 Nov 2007, David Mathog wrote: It would have been interesting if C++ had implemented operator definition instead of operator overloading (ie, redefinition). For instance like: A = B + C D Admittedly it looks a bit odd, but when maintaining the code a programmer would see and know

Re: [Beowulf] Teaching Scientific Computation (looking fo the perfect text)

2007-11-21 Thread Robert G. Brown
On Wed, 21 Nov 2007, Peter St. John wrote: Speaking of octonions (ahem), has everyone read "An Exceptionally Simple Theory of Everything"? The wiki article is at http://en.wikipedia.org/wiki/An_Exceptionally_Simple_Theory_of_Everything and the ArXiv item, 31 pp PDF, I think worth skimming even i

Re: [Beowulf] Joe Blaylock's notes on running a MacOS cluster, Nov. 2007

2007-11-21 Thread Robert G. Brown
On Wed, 21 Nov 2007, Greg Lindahl wrote: On Wed, Nov 21, 2007 at 02:48:48PM -0500, Robert G. Brown wrote: But what if they'd STARTED by selling NeXTStep as a Unix for PCs back before Linux was really born, for $50 a seat. OS/2 and Windows BOTH would have been stillborn, and Jobs would be Gate

[Beowulf] Software RAID?

2007-11-21 Thread Ekechi Nwokah
Hi, Does anyone know of any software RAID solutions that come close to the performance of a commodity RAID card such as LSI/3ware/Areca for direct-attached drives? With the availability multi-core chips and SSE instruction sets, it would seem to me that this is doable. Would be nice to not have t

Re: [Beowulf] Teaching Scientific Computation (looking fo the perfect text)

2007-11-21 Thread David Mathog
Robert G. Brown wrote > On Wed, 21 Nov 2007, David Mathog wrote: > Unless, of course, one works in a graded (geometric) division algebra... > but yes, I agree. And it isn't much harder to call csum(a,b,c) where > they are complex structs, or do whatever the GSL uses to accomplish the > same thing

Re: [Beowulf] Joe Blaylock's notes on running a MacOS cluster, Nov. 2007

2007-11-21 Thread Greg Lindahl
On Wed, Nov 21, 2007 at 02:48:48PM -0500, Robert G. Brown wrote: > But what if they'd STARTED by selling NeXTStep as a Unix for PCs back > before Linux was really born, for $50 a seat. OS/2 and Windows BOTH > would have been stillborn, and Jobs would be Gates today. Dude, at some point your "hey

Re: [Beowulf] Teaching Scientific Computation (looking fo the perfect text)

2007-11-21 Thread Peter St. John
Speaking of octonions (ahem), has everyone read "An Exceptionally Simple Theory of Everything"? The wiki article is at http://en.wikipedia.org/wiki/An_Exceptionally_Simple_Theory_of_Everything and the ArXiv item, 31 pp PDF, I think worth skimming even if not ...any of several relevant difficult spe

Re: [Beowulf] Teaching Scientific Computation (looking fo the perfect text)

2007-11-21 Thread Joe Landman
Robert G. Brown wrote: A = B + CROSS_PRODUCT(C,D) Ah but are A and B vectors or pseudovectors? Just kidding...;-) Quaternions ... :) -- Joseph Landman, Ph.D Founder and CEO Scalable Informatics LLC, email: [EMAIL PROTECTED] web : http://www.scalableinformatics.com http://jackra

Re: [Beowulf] Joe Blaylock's notes on running a MacOS cluster, Nov. 2007

2007-11-21 Thread Robert G. Brown
On Wed, 21 Nov 2007, Tim Cutts wrote: It didn't work for Mac OS X's previous incarnation, though, in the form of NextSTEP, did it? Selling that platform as an OS and abandoning hardware manufacture did not save NeXT. Yeah, but that's because it was too late and everybody knew that while Next

Re: [Beowulf] Question about list

2007-11-21 Thread Robert G. Brown
On Thu, 22 Nov 2007, Jeffrey B. Layton wrote: A quick question about the list. Can I post job openings to the list or is that in bad taste? People have certainly done so in the past. I think of it this way. If you contribute a lot of signal to the list, absolutely. That means that if you pe

Re: [Beowulf] Teaching Scientific Computation (looking fo the perfect text)

2007-11-21 Thread Robert G. Brown
On Wed, 21 Nov 2007, David Mathog wrote: Joe Landman <[EMAIL PROTECTED]> wrote: There are a myriad of ways to handle complex in C, but you can't easily write complex A,B,C,D A = B + C*D with anything like the clarity of Fortran. The reason it's clear is that + means additio

Re: [Beowulf] Joe Blaylock's notes on running a MacOS cluster, Nov. 2007

2007-11-21 Thread Robert G. Brown
On Wed, 21 Nov 2007, Mark Hahn wrote: I also think that Apples' current success has a lot more to do with its Apple's current success is as a music-playing-jewelry company, currently expanding into the status-symbol-phone market. there is some status-symbol leakage ("halo effect") into their

Re: [Beowulf] Joe Blaylock's notes on running a MacOS cluster, Nov. 2007

2007-11-21 Thread Tim Cutts
On 21 Nov 2007, at 3:00 pm, Robert G. Brown wrote: On Wed, 21 Nov 2007, Tim Cutts wrote: I have to say I have some sympathy with that view. Much though I love OS X as a desktop OS, I have to wonder why anyone would jump through hoops building a cluster running just Darwin, when they cou

RE: [Beowulf] scaling SPECint_base2000 for harpertown

2007-11-21 Thread Tom Elken
> -Original Message- > [mailto:[EMAIL PROTECTED] On Behalf Of Tom Elken > Sent: Wednesday, November 21, 2007 9:02 AM > To: andrew holway; Beowulf Mailing List > Subject: RE: [Beowulf] scaling SPECint_base2000 for harpertown > > > http://www.moonet.co.uk/2004 > > >From what I can interpr

[Beowulf] Question about list

2007-11-21 Thread Jeffrey B. Layton
A quick question about the list. Can I post job openings to the list or is that in bad taste? Thanks! Jeff ___ Beowulf mailing list, Beowulf@beowulf.org To change your subscription (digest mode or unsubscribe) visit http://www.beowulf.org/mailman/lis

Re: [Beowulf] Joe Blaylock's notes on running a MacOS cluster, Nov. 2007

2007-11-21 Thread Jon Forrest
Mark Hahn wrote: Apple's current success is as a music-playing-jewelry company, currently expanding into the status-symbol-phone market. there is some status-symbol leakage ("halo effect") into their pretty-computer sideline. One way to see if this is true is to go to the MacWorld Expo exhi

Re: [Beowulf] Teaching Scientific Computation (looking fo the perfect text)

2007-11-21 Thread David Mathog
Joe Landman <[EMAIL PROTECTED]> wrote: > There are a myriad > of ways to handle complex in C, but you can't easily write > > complex A,B,C,D > > A = B + C*D > > with anything like the clarity of Fortran. The reason it's clear is that + means addition, and * means multiplication, ex

Re: [Beowulf] Joe Blaylock's notes on running a MacOS cluster, Nov. 2007

2007-11-21 Thread Mark Hahn
I also think that Apples' current success has a lot more to do with its Apple's current success is as a music-playing-jewelry company, currently expanding into the status-symbol-phone market. there is some status-symbol leakage ("halo effect") into their pretty-computer sideline. although maco

Re: [Beowulf] Joe Blaylock's notes on running a MacOS cluster, Nov.2007

2007-11-21 Thread Michael Will
My crystal ball shows an advent of solaris simply because its not the soon-to-be-microsoft-dominated linux codebase. .. Shudder... Then again with software patent wars the actual codebase does not matter anymore... Michael Sent from my GoodLink synchronized handheld (www.good.com) -Origi

RE: [Beowulf] scaling SPECint_base2000 for harpertown

2007-11-21 Thread Tom Elken
> [mailto:[EMAIL PROTECTED] On Behalf Of andrew holway > I recently got SPECint_base2000 figures from intel for > harpertown using low optimisation flags (-O2 -pthread -fPIC). > This benchmark is commonly used in particle physics circles > to provide a common base. > I was expecting the number

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Nathan Moore
> > > I just get spoiled with the substantially better graphing capabilities > of > > Matlab, and some of the toolbox things that one gets used to. Sure, one > > could probably find equivalents (or write them) for Octave, but it's > nice > > when it's just right there. > > I don't "use" either one

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Jeffrey B. Layton
Jim Lux wrote: I just get spoiled with the substantially better graphing capabilities of Matlab, and some of the toolbox things that one gets used to. Sure, one could probably find equivalents (or write them) for Octave, but it's nice when it's just right there. Agreed. A few years ago I wro

Re: [Beowulf] Joe Blaylock's notes on running a MacOS cluster, Nov. 2007

2007-11-21 Thread Robert G. Brown
On Wed, 21 Nov 2007, Geoff wrote: While their OS is indeed constrained to their hardware, you can freely install and run other OSs on their hardware (Windows, Linux and *BSD) so I would agree they tend to position themselves as a hardware company but I disagree that they will need to make a ch

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Joshua Baker-LePain
On Wed, 21 Nov 2007 at 10:36am, Robert G. Brown wrote I'm just describing what Duke had, which I'm pretty familiar with because we faced these actual costs a couple of years ago and had to go renegotiate our whole deal with them. It is a bit better now -- I think Duke just dickered out an unlim

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Joe Landman
Jeffrey B. Layton wrote: In Fortran it's always been x**y. The good compilers let x and y be any data types (I've not tried using a complex as the exponent though). It should be noted that I haven't been actively using Fortran for the better part of the last decade. This is not a choice issu

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Joshua Baker-LePain
On Tue, 20 Nov 2007 at 8:49pm, Jim Lux wrote Quoting Joshua Baker-LePain <[EMAIL PROTECTED]>, on Tue 20 Nov 2007 05:07:23 PM PST: On Tue, 20 Nov 2007 at 4:28pm, Jim Lux wrote Quoting Joe Landman <[EMAIL PROTECTED]>, on Tue 20 Nov 2007 04:09:04 PM PST: Anyone need an adjunct ... :) I was

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Joe Landman
Robert G. Brown wrote: [ language war elided ] Fortran's I/O commands are terrible. Fortran is miserable if you have Well, yes ... to manipulate text. Fortran isn't the easiest thing (consequently) to Just remember, all text is an array I wrote a rough equivalent of strtok in fo

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Joe Landman
Robert G. Brown wrote: And textbook prices are, frankly, highway robbery as well. I have a couple of them online for free, and students all over the world use them. A textbook SHOULD cost around $25, not $125. And one day Awe ... cmon ... professors have to make a living too ... :^ -- Jo

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Robert G. Brown
On Thu, 22 Nov 2007, Jeffrey B. Layton wrote: You haven't tried anything F90 or above. Take a look at some tutorials. It's basically the same as in C now. You have allocation, pointers (if you want them). And if we can just get C to add binary exponentiation, and fortran to add {} support for

Re: [Beowulf] scaling SPECint_base2000 for harpertown

2007-11-21 Thread Mark Hahn
Is this expected? These are aggregate figures for a dual socket machine with 1.5GB ram per core. why not? spec2000 is terrifically in-cache. ___ Beowulf mailing list, Beowulf@beowulf.org To change your subscription (digest mode or unsubscribe) visit

Re: [Beowulf] Joe Blaylock's notes on running a MacOS cluster, Nov. 2007

2007-11-21 Thread Geoff
One day Apple will make up its mind about whether it is a hardware company or a software company. I vote soft, and thought that once they supported generic Intel even their main company management would "get it". It continues to think "hard" though, probably because they armtwist a significan

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Robert G. Brown
On Wed, 21 Nov 2007, Jim Lux wrote: Quoting "Robert G. Brown" <[EMAIL PROTECTED]>, on Wed 21 Nov 2007 05:56:51 AM PST: On Tue, 20 Nov 2007, Jim Lux wrote: Octave is nice, but the graphics are MUCH better in Matlab, and there's all those toolboxes full of cool stuff (signal processing,

Re: [Beowulf] Joe Blaylock's notes on running a MacOS cluster, Nov. 2007

2007-11-21 Thread Robert G. Brown
On Wed, 21 Nov 2007, Tim Cutts wrote: I have to say I have some sympathy with that view. Much though I love OS X as a desktop OS, I have to wonder why anyone would jump through hoops building a cluster running just Darwin, when they could probably have done it much more easily, and with much

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Jeffrey B. Layton
Robert G. Brown wrote: On Tue, 20 Nov 2007, Donald Shillady wrote: Hi, I am one of those old grey-haired Professors who spent years since 1963 using variants of FORTRAN with time out for four years of enforced Burroughs ALGOL and then back to FORTRAN. In Chemistry education there is an added

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Robert G. Brown
On Tue, 20 Nov 2007, Joshua Baker-LePain wrote: You do raise an interesting question. Would one student running an application on N machines need N copies under their academic student license? Almost certainly yes. Raise that to certainly yes. I have a student who is using matlab this sem

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Robert G. Brown
On Tue, 20 Nov 2007, Nathan Moore wrote: Our institution has a site license for Mathematica and between that and a compiled langauge, I feel guilty telling my students to spend more money on something that seems to be of only marginal utility. Also, (and I'm sure I'm wrong on this), Matlab seem

RE: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Robert G. Brown
On Tue, 20 Nov 2007, Donald Shillady wrote: Hi, I am one of those old grey-haired Professors who spent years since 1963 using variants of FORTRAN with time out for four years of enforced Burroughs ALGOL and then back to FORTRAN. In Chemistry education there is an added problem of students who

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Jim Lux
Quoting "Robert G. Brown" <[EMAIL PROTECTED]>, on Wed 21 Nov 2007 05:56:51 AM PST: On Tue, 20 Nov 2007, Jim Lux wrote: Octave is nice, but the graphics are MUCH better in Matlab, and there's all those toolboxes full of cool stuff (signal processing, control systems, maps, etc.) An

Re: [Beowulf] Teaching Scientific Computation (looking for the perfect text)

2007-11-21 Thread Robert G. Brown
On Tue, 20 Nov 2007, Jim Lux wrote: Octave is nice, but the graphics are MUCH better in Matlab, and there's all those toolboxes full of cool stuff (signal processing, control systems, maps, etc.) And, an academic license for Matlab is only $100. That's less than the textbook likely cost

[Beowulf] scaling SPECint_base2000 for harpertown

2007-11-21 Thread andrew holway
I recently got SPECint_base2000 figures from intel for harpertown using low optimisation flags (-O2 -pthread -fPIC). This benchmark is commonly used in particle physics circles to provide a common base. I was expecting the numbers to scale pretty much exactly but if you look at the link below the

Re: [Beowulf] help on building Beowulf

2007-11-21 Thread Bill Broadley
I ran a 32 node/64 cpu and a 16 node 32 cpu (although I tinkered with hyperthreading for twice that) for 3 years or so. Mryinet was stable, did occasionally have problems with job clean up, but I've seen similar with infinipath, infiniband, and even ethernet. We had a few support calls and got