[Bug 1640171] [NEW] Molecules are not rendered, black screen
Public bug reported: Description: Recent version of avogadro package is not working properly. It is not possible to draw molecule or to display molecule from the pdb/gro file. Ubuntu version: Description:Ubuntu 16.10 Release:16.10 Here is the console log: @jakubkrajniak ~ $ avogadro "Avogadro version: 1.1.1 Git: LibAvogadro version:1.1.1 Git:" Locale: "en_US" Libavogadro translations not found. System has OpenGL support. About to test OpenGL capabilities. OpenGL capabilities found: Double Buffering. Direct Rendering. Antialiasing. Loading plugins: "/usr/bin/../lib/avogadro/1_1" Searching for plugins in "/usr/lib/avogadro/1_1" Searching for plugins in "/usr/lib/avogadro/1_1/colors" Searching for plugins in "/usr/lib/avogadro/1_1/engines" Searching for plugins in "/usr/lib/avogadro/1_1/extensions" Searching for plugins in "/usr/lib/avogadro/1_1/tools" Loading plugins: "/home/teodor/.avogadro/1_1/plugins" Settings are missing for the next engines: () QStackedLayout::setCurrentWidget: Widget 0x55f9c0f637b0 not contained in stack dev warning: Extension "GAMESS" is using a deprecated DockWidget loading method. See Extension::dockWidgets() documentation. dev warning: Extension "Orbitals" is using a deprecated DockWidget loading method. See Extension::dockWidgets() documentation. Could not find python module... dev warning: Extension "Python Terminal" is using a deprecated DockWidget loading method. See Extension::dockWidgets() documentation. dev warning: Extension "Vibration" is using a deprecated DockWidget loading method. See Extension::dockWidgets() documentation. GLWidget initialisation... GLSL support enabled, OpenGL 2.0 support confirmed. GLWidget initialised... createObjects() libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile libpng warning: iCCP: known incorrect sRGB profile libpng warning: cHRM: invalid chromaticities Qt has caught an exception thrown from an event handler. Throwing exceptions from an event handler is not supported in Qt. You must reimplement QApplication::notify() and catch all exceptions there. ** Affects: avogadro (Ubuntu) Importance: Undecided Status: New ** Attachment added: "avogadro_empty_screen_2016-11-08_14-46-13.png" https://bugs.launchpad.net/bugs/1640171/+attachment/4774452/+files/avogadro_empty_screen_2016-11-08_14-46-13.png -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1640171 Title: Molecules are not rendered, black screen To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/avogadro/+bug/1640171/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1638373] Re: End marker/start marker drop-down menus are empty
Confirmed that the latest proposed package version solved the bug. Package version: inkscape: Installed: 0.91-11ubuntu16.10.1 Candidate: 0.91-11ubuntu16.10.1 Version table: *** 0.91-11ubuntu16.10.1 400 400 http://nl.archive.ubuntu.com/ubuntu yakkety-proposed/main amd64 Packages 100 /var/lib/dpkg/status 0.91-11 500 500 http://nl.archive.ubuntu.com/ubuntu yakkety/main amd64 Packages -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1638373 Title: End marker/start marker drop-down menus are empty To manage notifications about this bug go to: https://bugs.launchpad.net/inkscape/+bug/1638373/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1638373] Re: End marker/start marker drop-down menus are empty
Yes, that's the whole file. Temporarily I did how you suggested and replaced the file. Here is the apt-cache policy inkscape: @jakubkrajniak Downloads $ apt-cache policy inkscape inkscape: Installed: 0.91-11 Candidate: 0.91-11 Version table: *** 0.91-11 500 500 http://pl.archive.ubuntu.com/ubuntu yakkety/main amd64 Packages 100 /var/lib/dpkg/status -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1638373 Title: End marker/start marker drop-down menus are empty To manage notifications about this bug go to: https://bugs.launchpad.net/inkscape/+bug/1638373/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1241660] Re: update-manager fails when upgrading from 13.04 to 13.10
In my case the problem was with /tmp tmpfs on /tmp type tmpfs (rw,noexec,nosuid) The bug disappear after I removed the noexec flag: sudo mount -o remount,exec /tmp -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1241660 Title: update-manager fails when upgrading from 13.04 to 13.10 To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/ubuntu-release-upgrader/+bug/1241660/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
