[R-pkg-devel] how to provide an example for my package when I want to generate a figure
Hello all, I have a fairly simple package I want to make. It takes two dataframes and then creates a jpeg (a heat map) based on the info in the dataframes. I know how to put the code in the vignette. But as to how to make an example, I don't know that. Would I put the code in the R code for the heat map? How can I do this, it seems very foggy to me. Thanks, Matthew Sent with [ProtonMail](https://protonmail.com) Secure Email. [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
[R-pkg-devel] error messages
Hello R package developers, I tried sending in my package for the fifth time or so, but it still says that it has errors. I read the error messages but I cannot figure out what the error could be. Does anyone know? Thanks, Matthew -- Windows * using log directory 'd:/RCompile/CRANincoming/R-devel/hybridogram.Rcheck' * using R Under development (unstable) (2021-04-11 r80157) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'hybridogram/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'hybridogram' version '0.2.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Matthew Cserhati < csma...@protonmail.com >' New submission * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'hybridogram' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [4s] OK * checking for missing documentation entries ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... NONE * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [1s] OK * checking PDF version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE Debian * using log directory ‘/srv/hornik/tmp/CRAN/hybridogram.Rcheck’ * using R Under development (unstable) (2021-04-12 r80161) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘hybridogram/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘hybridogram’ version ‘0.2.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: ‘Matthew Cserhati < csma...@protonmail.com >’ New submission * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘hybridogram’ can be installed ... [0s/0s] ERROR Installation failed. See ‘/srv/hornik/tmp/CRAN/ hybridogram.Rcheck/00install.out ’ for details. * DONE Status: 1 ERROR, 1 NOTE [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
[R-pkg-devel] creating a function that creates a figure
Hello all, Normally, when you write a function in R, it returns a value. That way it is easy to write an .Rd file for this function. However, I have written a function that does no such thing. Rather, it takes as input two data frames, and creates a figure. But doesn't return anything. In R package language, how do I write the examples in the .R file when I need to define the input variable first as a data frame? I can't just write it as add(1,2) which returns 3. Any help? Thanks so much, Matthew Sent with [ProtonMail](https://protonmail.com) Secure Email. [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
[R-pkg-devel] pairwiseAlignment
Hello,
I am trying to align two sequences, in DNAString format using the R command
pairwiseAlignment.
I keep getting this error:
pairwiseAlignment(si,sj)
Error in .Call2("XStringSet_align_pairwiseAlignment", pattern, subject, :
max(nchar(pattern) * nchar(subject)) is too big (must be <= 2147483647)
The 2 DNAstrings are si and sj, and are 108,007 bp and 120,698 bp long,
respectively.
Can someone help me? Are the sequences too long perchance?
Thanks, Matthew
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[R-pkg-devel] fviz_nbclust
Hello all, I am having difficulty installing the factoextra package. I want to run the fviz_nbclust command. Error message [truncated]: The downloaded source packages are in ‘/tmp/RtmpXEQfNc/downloaded_packages’ Installation paths not writeable, unable to update packages path: /usr/lib/R/library packages: boot, KernSmooth, MASS, Matrix, mgcv, nnet, spatial Warning messages: 1: In .inet_warning(msg) : installation of package ‘curl’ had non-zero exit status 2: In .inet_warning(msg) : installation of package ‘rio’ had non-zero exit status 3: In .inet_warning(msg) : installation of package ‘car’ had non-zero exit status 4: In .inet_warning(msg) : installation of package ‘rstatix’ had non-zero exit status 5: In .inet_warning(msg) : installation of package ‘FactoMineR’ had non-zero exit status 6: In .inet_warning(msg) : installation of package ‘ggpubr’ had non-zero exit status 7: In .inet_warning(msg) : installation of package ‘factoextra’ had non-zero exit status I am using R version 3.6.3. Thanks, Matthew Sent with [ProtonMail](https://protonmail.com/) Secure Email. [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
