Re: [R-pkg-devel] Source code of an existing package

2016-08-10 Thread Tim Appelhans

Hi,
I always use metacran to access package sources.
https://github.com/cran/boot

Tim

On 11.08.2016 06:57, Holger Hoefling wrote:

Hi,

If you are interested in the source code of an entire package in its
original form - you can also download the .tar.gz version of the package
from CRAN. In a .tar.gz, you find the sources, unlike the .zip for windows,
which is already compiled.

If you are under windows, you can use a program such as 7-zip to unzip the
.tar.gz (which is mostly used on unix systems).

The R code of the package is in the R subfolder

In your case, the function boot.ci, is in

R/bootfuns.q

and starts in the latest version on line 859

Best

Holger

On Thu, Aug 11, 2016 at 3:42 AM, Marcelo Carvalho Fernandes <
mcf2...@gmail.com> wrote:


Hi all!

I am interested in seeing the source code of the boot.ci() function of
the boot package.

Is it possible to have such source code? How?

Thanks in advance,

---
Marcelo Carvalho Fernandes
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Tim Appelhans
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Environmental Informatics
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Re: [R-pkg-devel] What is the proper way to include README.Rmd generated png’s for package submission to CRAN?

2017-05-21 Thread Tim Appelhans
I don't know if this is the proper way but if you host your package on 
github what you can do is add the image you want to be displayed in a 
'inst' or 'docs' (in case you use pkgdown) folder push to github and 
then include a link to that image in README.md. This is how we do this 
in mapview


https://github.com/r-spatial/mapview/blob/master/README.md

which shows up fine on CRAN too

https://cran.r-project.org/web/packages/mapview/README.html

Best

Tim

On 22.05.2017 03:48, Sebastian Kopf wrote:

Hi all,

I’m stuck trying to figure out the appropriate way to include figures
generated by a README.Rmd for package submission to CRAN. Any advice much
appreciated. Here is the problem:

  - I generated an RMarkdown package README using
`devtools::use_readme_rmd()`, leaving the chunk options intact (i.e.
`fig.path=‘README-‘`)

  - I included basic instructions and links to the vignettes but would also
like to include an example figure so I added a chunk in the README.Rmd that
generates and correctly saves the resulting figure in README-example-1.png

  - The package passes `devtools::check(cran = TRUE)` without errors,
warnings or notes but generates a warning on win-builder because of the
figure with the following message:



*Conversion of 'README.md' failed:pandoc.exe: Could not fetch
README-example-1.pngREADME-example-1.png: openBinaryFile: does not exist
(No such file or directory) *

I understand that this is correct behavior because the file is of course
explicitly excluded from the build (`^README-.*\.png$` in .Rbuildignore),
and without this line in .Rbuildignore I would get a different warning that
this png should indeed not be part of the build.

What I could not figure out is how I should proceed with this so it passes
win_builder.

I checked how this is done in the ggplot2 GitHub repository (which also
includes a figure in its README.md that is generated by a README.Rmd) and
made sure my .Rbuildignore and other settings are all correct. I eventually
realized that the README.html generated on CRAN for ggplot2 actually does
not have the png included either (
https://cran.r-project.org/web/packages/ggplot2/README.html) so perhaps
this is just not possible and I need to communicate to win_builder that it
will indeed be missing this png in some way? Or perhaps I should just avoid
having an example figure in the README altogether?

Any help much appreciated, I apologize if this turns out to be a trivial
question and there is some different way I should be generating the README
for submission to CRAN.

Best regards,
Sebastian

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