[R-pkg-devel] CRAN upload and prechecking confusion

[Johannes Graumann]

Hello,

I'm trying to submit a new version (0.10.2) of my package
(multipanelfigure) to CRAN and have received the following email:

> Dear maintainer,
>  
> package multipanelfigure_0.10.2.tar.gz does not pass the incoming
> checks automatically, please see the pre-test at:
>  tipanelfigure_0102/00check.log>
> Status: 2 NOTEs
>  
> Current CRAN status: ERROR: 1, OK: 10
> See:  igure.html>

This is confusing. What's the deal breaker? 
The 2 Notes (which are timing issues related to drawing grid graphics)
or 
the Error on x86_64-apple-darwin15.6.0 which is based on the fact that
gridGraphics is unavailable for that platform and even more
confungsingly seems to be based on the former version (0.9.0) of the
package ...

Thanks for any hints.

Sincerely, Joh

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Re: [R-pkg-devel] CRAN upload and prechecking confusion

[Johannes Graumann]

On Thu, 2017-08-24 at 02:59 -0500, Brian G. Peterson wrote:
> On 08/24/2017 02:28 AM, Johannes Graumann wrote:
> > Hello,
> > 
> > I'm trying to submit a new version (0.10.2) of my package
> > (multipanelfigure) to CRAN and have received the following email:
> > 
> > > Dear maintainer,
> > >   
> > > package multipanelfigure_0.10.2.tar.gz does not pass the incoming
> > > checks automatically, please see the pre-test at:
> > > <https://win-builder.r-project.org/incoming_pretest/170824_085724
> > > _mul
> > > tipanelfigure_0102/00check.log>
> > > Status: 2 NOTEs
> > >   
> > > Current CRAN status: ERROR: 1, OK: 10
> > > See: <https://CRAN.R-project.org/web/checks/check_results_multipa
> > > nelf
> > > igure.html>
> > 
> > This is confusing. What's the deal breaker?
> > The 2 Notes (which are timing issues related to drawing grid
> > graphics)
> > or
> > the Error on x86_64-apple-darwin15.6.0 which is based on the fact
> > that
> > gridGraphics is unavailable for that platform and even more
> > confungsingly seems to be based on the former version (0.9.0) of
> > the
> > package ...
> 
> The URL's you've referenced have both expired.
> 
> I would suggest re-running your package checks using R-devel on RHub
> and 
> Winbuilder first, and copying any output you receive.
> 
> Then it will be easier for others to help you.
Thank you for that hint. I run on https://builder.r-hub.io and as on my
own arch systems, there appears to be NO issue with the package using
debian:
2591#> About to run xvfb-run R CMD check multipanelfigure_0.10.2.tar.gz
2592#> * using log directory ‘/home/docker/multipanelfigure.Rcheck’
2593#> * using R Under development (unstable) (2017-08-19 r73108)
2594#> * using platform: x86_64-pc-linux-gnu (64-bit)
2595#> * using session charset: UTF-8
2596#> * checking for file ‘multipanelfigure/DESCRIPTION’ ... OK
2597#> * checking extension type ... Package
2598#> * this is package ‘multipanelfigure’ version ‘0.10.2’
2599#> * checking package namespace information ... OK
2600#> * checking package dependencies ... OK
2601#> * checking if this is a source package ... OK
2602#> * checking if there is a namespace ... OK
2603#> * checking for executable files ... OK
2604#> * checking for hidden files and directories ... OK
2605#> * checking for portable file names ... OK
2606#> * checking for sufficient/correct file permissions ... OK
2607#> * checking whether package ‘multipanelfigure’ can be installed
... OK
2608#> * checking installed package size ... OK
2609#> * checking package directory ... OK
2610#> * checking ‘build’ directory ... OK
2611#> * checking DESCRIPTION meta-information ... OK
2612#> * checking top-level files ... OK
2613#> * checking for left-over files ... OK
2614#> * checking index information ... OK
2615#> * checking package subdirectories ... OK
2616#> * checking R files for non-ASCII characters ... OK
2617#> * checking R files for syntax errors ... OK
2618#> * checking whether the package can be loaded ... OK
2619#> * checking whether the package can be loaded with stated
dependencies ... OK
2620#> * checking whether the package can be unloaded cleanly ... OK
2621#> * checking whether the namespace can be loaded with stated
dependencies ... OK
2622#> * checking whether the namespace can be unloaded cleanly ... OK
2623#> * checking loading without being on the library search path ...
OK
2624#> * checking dependencies in R code ... OK
2625#> * checking S3 generic/method consistency ... OK
2626#> * checking replacement functions ... OK
2627#> * checking foreign function calls ... OK
2628#> * checking R code for possible problems ... OK
2629#> * checking Rd files ... OK
2630#> * checking Rd metadata ... OK
2631#> * checking Rd cross-references ... OK
2632#> * checking for missing documentation entries ... OK
2633#> * checking for code/documentation mismatches ... OK
2634#> * checking Rd \usage sections ... OK
2635#> * checking Rd contents ... OK
2636#> * checking for unstated dependencies in examples ... OK
2637#> * checking contents of ‘data’ directory ... OK
2638#> * checking data for non-ASCII characters ... OK
2639#> * checking data for ASCII and uncompressed saves ... OK
2640#> * checking installed files from ‘inst/doc’ ... OK
2641#> * checking files in ‘vignettes’ ... OK
2642#> * checking examples ... OK
2643#> * checking for unstated dependencies in vignettes ... OK
2644#> * checking package vignettes in ‘inst/doc’ ... OK
2645#> * checking running R code from vignettes ...
2646#> ‘panel-positioning.Rmd’ ... OK
2647#> ‘scaling-clipping-images.Rmd’ ... OK
2648#> NONE
2649#> * checking re-building of vignette outputs ... OK
2650#> * checking PDF version of manual ... OK
2651#> * DONE
2652#> Status: OK

Am rerunning on windows now ...

Sincerely, Joh

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Re: [R-pkg-devel] CRAN upload and prechecking confusion

[Johannes Graumann]

On Thu, 2017-08-24 at 02:59 -0500, Brian G. Peterson wrote:
> On 08/24/2017 02:28 AM, Johannes Graumann wrote:
> > Hello,
> > 
> > I'm trying to submit a new version (0.10.2) of my package
> > (multipanelfigure) to CRAN and have received the following email:
> > 
> > > Dear maintainer,
> > >   
> > > package multipanelfigure_0.10.2.tar.gz does not pass the incoming
> > > checks automatically, please see the pre-test at:
> > > <https://win-builder.r-project.org/incoming_pretest/170824_085724
> > > _mul
> > > tipanelfigure_0102/00check.log>
> > > Status: 2 NOTEs
> > >   
> > > Current CRAN status: ERROR: 1, OK: 10
> > > See: <https://CRAN.R-project.org/web/checks/check_results_multipa
> > > nelf
> > > igure.html>
> > 
> > This is confusing. What's the deal breaker?
> > The 2 Notes (which are timing issues related to drawing grid
> > graphics)
> > or
> > the Error on x86_64-apple-darwin15.6.0 which is based on the fact
> > that
> > gridGraphics is unavailable for that platform and even more
> > confungsingly seems to be based on the former version (0.9.0) of
> > the
> > package ...
> 
> The URL's you've referenced have both expired.
> 
> I would suggest re-running your package checks using R-devel on RHub
> and 
> Winbuilder first, and copying any output you receive.
> 
> Then it will be easier for others to help you.
Have a look hier:
https://builder.r-hub.io/status/multipanelfigure_0.10.2.tar.gz-7184a1dc
6654eaea5463f8cc9cac3f73
https://builder.r-hub.io/status/multipanelfigure_0.10.2.tar.gz-033531ed
74ed5a90ce66bac077293e3c
https://builder.r-hub.io/status/multipanelfigure_0.10.2.tar.gz-1c5377c9
369c4936e0c5e1a81c863275

Linux & windows work. OSX fails because gridGraphics (currently) does
not exist for the platform.

In the meantime CRAN (Uwe Ligges) got back telling me the problem is
long timing in an example ... this is based on grid speed and as the
package heavily uses that I feel uncomfortable moving the example to
'dontrun' ... thoughts.

Sincerely, Joh

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[R-pkg-devel] Attempted resurrection of archived package multipanelfigure - CRAN auto checking failure

[Johannes Graumann]

Hello,

As `assertive.properties`, `assertive.strings` and `assertive.types`
have recently been archived so were my packages depending on them,
including `multipanelfigure`.

I have prepared a maintenance release that tackles the problem, but
gets stuck in the automated CRAN upload checks with (among fixable
things I understand)


```
* checking examples ... [13s/3s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
images 7.745  0.4510.53
Examples with CPU time > 2.5 times elapsed time
user system elapsed  ratio
images 7.745  0.451   0.530 15.464
multi_panel_figure 2.193  0.028   0.624  3.559
```

and

```
 Version: 2.1.2
Check: examples
Result: ERROR
Running examples in 'multipanelfigure-Ex.R' failed
The error most likely occurred in:

> ### Name: images
> ### Title: Images
> ### Aliases: images rhino unicorn
>
> ### ** Examples
>
> figure <- multi_panel_figure(
+ width = c(60, 40, 40), height = c(40, 40, 40)
+ )
> image_files <- system.file("extdata", package =
"multipanelfigure") %>%
+ dir(full.names = TRUE) %>%
+ setNames(basename(.))
> figure %>%
+ fill_panel(image_files["farouq.tiff"]) %>%
+ fill_panel(image_files["unicorn.svg"], column = 2:3) %>%
+ fill_panel(image_files["rhino.jpg"], row = 2:3) %>%
+ fill_panel(image_files["Rlogo.png"], column = 2:3, row = 2:3)
Setting row to 1
Setting column to 1
Warning in warn_about_file.access_under_windows() :
 This function depends on file.access, which can give unexpected
results under Windows.
Setting row to 1
Warning in warn_about_file.access_under_windows() :
 This function depends on file.access, which can give unexpected
results under Windows.
Error: Rterm.exe: FailedToExecuteCommand `"inkscape"
"D:/temp/RtmpcT4q8r/magick-0pjdKGA38Vrmg26Rpy8FbMCLgqY8DdZL" --export-
png="D:/temp/RtmpcT4q8r/magick-Xb61MjOgNm6lBHYXVwvGxIHCLbghPNV5.png" --
export-dpi="300" --export-background="rgb(100%,100%,100%)" --export-
background-opacity="1" > "D:/temp/RtmpcT4q8r/magick-
cPFgzAdj7d3SLuAHnhzNhFqDYoUPr44g" 2>&1' (-1) @
error/delegate.c/ExternalDelegateCommand/514
Execution halted
Flavor: r-oldrel-windows-x86_64
```

Please advise how to fix this.

Sincerely, Joh

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Re: [R-pkg-devel] Attempted resurrection of archived package multipanelfigure - CRAN auto checking failure

[Johannes Graumann]

Hi,

Appropriate `\dontrun` clauses in the corresponding examples seem to
have made the package pass to the next level of (manual) checks;
fingers crossed that it will go in this time ...

Sincerely, Joh

On Sun, 2023-11-26 at 09:30 +0100, Johannes Graumann wrote:
> Hello,
> 
> As `assertive.properties`, `assertive.strings` and `assertive.types`
> have recently been archived so were my packages depending on them,
> including `multipanelfigure`.
> 
> I have prepared a maintenance release that tackles the problem, but
> gets stuck in the automated CRAN upload checks with (among fixable
> things I understand)
> 
> 
> ```
> * checking examples ... [13s/3s] NOTE
> Examples with CPU (user + system) or elapsed time > 5s
>     user system elapsed
> images 7.745  0.451    0.53
> Examples with CPU time > 2.5 times elapsed time
>     user system elapsed  ratio
> images 7.745  0.451   0.530 15.464
> multi_panel_figure 2.193  0.028   0.624  3.559
> ```
> 
> and
> 
> ```
>  Version: 2.1.2
> Check: examples
> Result: ERROR
>     Running examples in 'multipanelfigure-Ex.R' failed
>     The error most likely occurred in:
>     
>     > ### Name: images
>     > ### Title: Images
>     > ### Aliases: images rhino unicorn
>     >
>     > ### ** Examples
>     >
>     > figure <- multi_panel_figure(
>     + width = c(60, 40, 40), height = c(40, 40, 40)
>     + )
>     > image_files <- system.file("extdata", package =
> "multipanelfigure") %>%
>     + dir(full.names = TRUE) %>%
>     + setNames(basename(.))
>     > figure %>%
>     + fill_panel(image_files["farouq.tiff"]) %>%
>     + fill_panel(image_files["unicorn.svg"], column = 2:3) %>%
>     + fill_panel(image_files["rhino.jpg"], row = 2:3) %>%
>     + fill_panel(image_files["Rlogo.png"], column = 2:3, row = 2:3)
>     Setting row to 1
>     Setting column to 1
>     Warning in warn_about_file.access_under_windows() :
>  This function depends on file.access, which can give unexpected
> results under Windows.
>     Setting row to 1
>     Warning in warn_about_file.access_under_windows() :
>  This function depends on file.access, which can give unexpected
> results under Windows.
>     Error: Rterm.exe: FailedToExecuteCommand `"inkscape"
> "D:/temp/RtmpcT4q8r/magick-0pjdKGA38Vrmg26Rpy8FbMCLgqY8DdZL" --
> export-
> png="D:/temp/RtmpcT4q8r/magick-Xb61MjOgNm6lBHYXVwvGxIHCLbghPNV5.png"
> --
> export-dpi="300" --export-background="rgb(100%,100%,100%)" --export-
> background-opacity="1" > "D:/temp/RtmpcT4q8r/magick-
> cPFgzAdj7d3SLuAHnhzNhFqDYoUPr44g" 2>&1' (-1) @
> error/delegate.c/ExternalDelegateCommand/514
>     Execution halted
> Flavor: r-oldrel-windows-x86_64
> ```
> 
> Please advise how to fix this.
> 
> Sincerely, Joh
> 
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