[R-pkg-devel] c++17 on solaris cran
Hello everyone, I've got at package on CRAN which uses C++17. Package is at https://cran.r-project.org/web/packages/image.binarization/index.html The package fails on Solaris with the following message as my Makevars just contains CXX_STD = CXX17 indicating it requires C++17 * installing to library ‘/home/ripley/R/Lib32’ * installing *source* package ‘image.binarization’ ... ** package ‘image.binarization’ successfully unpacked and MD5 sums checked ** using staged installation ** libs Error: C++17 standard requested but CXX17 is not defined * removing ‘/home/ripley/R/Lib32/image.binarization’ real1.0 user0.7 sys 0.1 Looks like Solaris does not support C++17 yet. Is this error something that needs to be fixed by me? Will the package be removed from CRAN because of this. Any other people with C++17 code who can provide some advise. best, Jan Jan Wijffels Statistician www.bnosac.be | +32 486 611708 [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
[R-pkg-devel] Problem with V8 on CRAN Debian
Dear R community,
in an effort to re-submit one of my packages (thurstonianIRT) to CRAN
because of some test failures after updates of other packages, I get the
following error from the CRAN debian installation, which I don't know how
to address:
* installing *source* package ‘thurstonianIRT’ ...
** using staged installation
** libs
"/home/hornik/tmp/R/bin/Rscript" -e "source(file.path('..', 'tools',
'make_cc.R')); make_cc(commandArgs(TRUE))"
stan_files/thurstonian_irt_model.stan
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
‘/home/hornik/lib/R/Library/4.1/x86_64-linux-gnu/V8/libs/V8.so’:
libnode.so.64: cannot open shared object file: No such file or directory
Calls: make_cc ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
make: *** [Makevars:17: stan_files/thurstonian_irt_model.cc] Error 1
ERROR: compilation failed for package ‘thurstonianIRT’
* removing ‘/srv/hornik/tmp/CRAN/thurstonianIRT.Rcheck/thurstonianIRT’
It seems to be a problem with the V8 package (on which the latest version
of rstan depends) but I don't know if I can fix it from my side.
Many thanks for your advice
Paul
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Re: [R-pkg-devel] Problem with V8 on CRAN Debian
I have triggered new checks on the CRAN machines.
Best,
Uwe Ligges
On 03.08.2020 16:42, Paul Buerkner wrote:
Dear R community,
in an effort to re-submit one of my packages (thurstonianIRT) to CRAN
because of some test failures after updates of other packages, I get the
following error from the CRAN debian installation, which I don't know how
to address:
* installing *source* package ‘thurstonianIRT’ ...
** using staged installation
** libs
"/home/hornik/tmp/R/bin/Rscript" -e "source(file.path('..', 'tools',
'make_cc.R')); make_cc(commandArgs(TRUE))"
stan_files/thurstonian_irt_model.stan
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
‘/home/hornik/lib/R/Library/4.1/x86_64-linux-gnu/V8/libs/V8.so’:
libnode.so.64: cannot open shared object file: No such file or directory
Calls: make_cc ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
make: *** [Makevars:17: stan_files/thurstonian_irt_model.cc] Error 1
ERROR: compilation failed for package ‘thurstonianIRT’
* removing ‘/srv/hornik/tmp/CRAN/thurstonianIRT.Rcheck/thurstonianIRT’
It seems to be a problem with the V8 package (on which the latest version
of rstan depends) but I don't know if I can fix it from my side.
Many thanks for your advice
Paul
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Re: [R-pkg-devel] Problem with V8 on CRAN Debian
On 3 August 2020 at 16:42, Paul Buerkner wrote:
| Dear R community,
|
| in an effort to re-submit one of my packages (thurstonianIRT) to CRAN
| because of some test failures after updates of other packages, I get the
| following error from the CRAN debian installation, which I don't know how
| to address:
|
| * installing *source* package ‘thurstonianIRT’ ...
| ** using staged installation
| ** libs
| "/home/hornik/tmp/R/bin/Rscript" -e "source(file.path('..', 'tools',
| 'make_cc.R')); make_cc(commandArgs(TRUE))"
| stan_files/thurstonian_irt_model.stan
| Error in dyn.load(file, DLLpath = DLLpath, ...) :
| unable to load shared object
| ‘/home/hornik/lib/R/Library/4.1/x86_64-linux-gnu/V8/libs/V8.so’:
| libnode.so.64: cannot open shared object file: No such file or directory
| Calls: make_cc ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
| Execution halted
| make: *** [Makevars:17: stan_files/thurstonian_irt_model.cc] Error 1
| ERROR: compilation failed for package ‘thurstonianIRT’
| * removing ‘/srv/hornik/tmp/CRAN/thurstonianIRT.Rcheck/thurstonianIRT’
|
|
| It seems to be a problem with the V8 package (on which the latest version
| of rstan depends) but I don't know if I can fix it from my side.
Tracing it:
edd@rob:~$ locate libnode.so.64
/usr/lib/x86_64-linux-gnu/libnode.so.64
edd@rob:~$ dpkg -S $(locate libnode.so.64)
libnode64:amd64: /usr/lib/x86_64-linux-gnu/libnode.so.64
edd@rob:~$
Looks like libnode64 needs to be installed. On systems that lack complete
dependency resolutions (cough, RSPM, cough) one needs libnode-dev; this
libnode64 above is dependency of libnode-dev.
Maybe you need to add 'libnode-dev' in SystemRequirements: ?
Dirk
--
https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
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Re: [R-pkg-devel] Problem with V8 on CRAN Debian
On 3 August 2020 at 10:07, Dirk Eddelbuettel wrote: | Tracing it: | | edd@rob:~$ locate libnode.so.64 | /usr/lib/x86_64-linux-gnu/libnode.so.64 | edd@rob:~$ dpkg -S $(locate libnode.so.64) | libnode64:amd64: /usr/lib/x86_64-linux-gnu/libnode.so.64 | edd@rob:~$ | | Looks like libnode64 needs to be installed. On systems that lack complete | dependency resolutions (cough, RSPM, cough) one needs libnode-dev; this | libnode64 above is dependency of libnode-dev. | | Maybe you need to add 'libnode-dev' in SystemRequirements: ? Much simpler. On Debian the so number is now 72 and no longer 64, so CRAN package V8 needs a simple rebuild to look for 72 and not the no-longer existing 64. CC'ing Kurt Hornik. I was, coincidentally, hitting the exact same issue on a Debian testing box running reverse depends. It's "the price we pay" by not having CRAN package tied to the system-level dependencies which can at time also change. Dirk -- https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
