Re: [R-pkg-devel] [CRAN-pretest-archived] CRAN submission RIBMDB 0.1.0

2020-05-01 Thread Binit Kumar 
Hi Team,

Based on the logs shared below, I need your help:

1) Windows:

Error: D:/RCompile/recent/R/library/RIBMDB_CLI/clidriver/bin/db2app64.dll: file 
not recognized: file format not recognized

Question: why is the windows environment unable to recognize the file? What 
could be the issue?



2) Debian:

Error: package or namespace load failed for 'RIBMDB' in dyn.load(file, DLLpath 
= DLLpath, ...):

unable to load shared object 
'/srv/hornik/tmp/CRAN/RIBMDB.Rcheck/00LOCK-RIBMDB/00new/RIBMDB/libs/RIBMDB.so':

  libdb2.so.1: cannot open shared object file: No such file or directory

Question: My package requires the clidriver component and as the same is 
downloaded in temp location the same will not be found. IN my local system 
there are two ways to have a workaround i.e. --no-test-load during package 
installation (OR) --no-staged-install during installation. Is there any other 
way that I can stop the folder being created be stopped from deleting or how to 
fix the test load issue. In my local system the package works fine even though 
test load fails.



Please let me know if you need additional details on my package RIBMDB.





Thanks & Regards,



Binit Kumar

Software Engineer, DB2 Connect

Rocket Software, Inc.(INDIA)

Karle Towers, HUB-I, NAGAVARA,

BANGALORE-45, KARNATAKA(INDIA)

T: +91 80 6745(7478)

Mob(IN): +91 9980233664

E: bku...@rocketsoftware.com

W: www.rocketsoftware.com



Please Keep your Mobile in Silent Mode at Work. Respect others.



-Original Message-
From: lig...@statistik.tu-dortmund.de 
mailto:lig...@statistik.tu-dortmund.de>>
Sent: Friday, May 1, 2020 10:50 AM
To: Binit Kumar mailto:bku...@rocketsoftware.com>>
Cc: cran-submissi...@r-project.org
Subject: [CRAN-pretest-archived] CRAN submission RIBMDB 0.1.0



EXTERNAL EMAIL











Dear maintainer,



package RIBMDB_0.1.0.tar.gz does not pass the incoming checks automatically, 
please see the following pre-tests:

Windows: 


Status: 1 ERROR, 1 NOTE

Debian: 


Status: 1 ERROR, 1 NOTE







Please fix all problems and resubmit a fixed version via the webform.

If you are not sure how to fix the problems shown, please ask for help on the 
R-package-devel mailing list:



If you are fairly certain the rejection is a false positive, please reply-all 
to this message and explain.



More details are given in the directory:



The files will be removed after roughly 7 days.



No strong reverse dependencies to be checked.



Best regards,

CRAN teams' auto-check service


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[R-pkg-devel] Rmarkdown vignette yields r inline warning on windows build

2020-05-01 Thread Matthew Young 
I am trying to submit a package to CRAN that includes a vignette built using 
rmarkdown.  It passes fine on the machines I have access to (ubuntu and osx).  
When I submit to CRAN using the form, it passes the Debian checks, but fails on 
windows with the following WARNING:

! Missing $ inserted.

$
l.1030

You may need to add $ $ around a certain inline R expression `r `


I’m really not sure what is causing this error or how to debug it.  I do not 
have any inline r expressions in my vignette (code here 
https://github.com/constantAmateur/SoupX/blob/devel/vignettes/pbmcTutorial.Rmd).
  I do have back-ticked expression such as `round`, but they are not executed 
code.  Can anyone suggest what might be causing this issue?

Many thanks,

Matthew



-- 
 The Wellcome Sanger Institute is operated by Genome Research 
 Limited, a charity registered in England with number 1021457 and a 
 company registered in England with number 2742969, whose registered 
 office is 215 Euston Road, London, NW1 2BE.
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Re: [R-pkg-devel] Rmarkdown vignette yields r inline warning on windows build

2020-05-01 Thread Max Turgeon 
Since you're looking for suggestions and that's all I have:


Could it be the space between the tick mark and the r? For example, does 
replacing ` round` with `round` (and all other instances) fix the issue?


Max Turgeon
Assistant Professor
Department of Statistics
Department of Computer Science
University of Manitoba
maxturgeon.ca



From: R-package-devel  on behalf of 
Matthew Young 
Sent: May 1, 2020 2:24:40 PM
To: r-package-devel@r-project.org
Subject: [R-pkg-devel] Rmarkdown vignette yields r inline warning on windows 
build


Caution: This message was sent from outside the University of Manitoba.


I am trying to submit a package to CRAN that includes a vignette built using 
rmarkdown.  It passes fine on the machines I have access to (ubuntu and osx).  
When I submit to CRAN using the form, it passes the Debian checks, but fails on 
windows with the following WARNING:

! Missing $ inserted.

$
l.1030

You may need to add $ $ around a certain inline R expression `r `


I�m really not sure what is causing this error or how to debug it.  I do not 
have any inline r expressions in my vignette (code here 
https://github.com/constantAmateur/SoupX/blob/devel/vignettes/pbmcTutorial.Rmd).
  I do have back-ticked expression such as `round`, but they are not executed 
code.  Can anyone suggest what might be causing this issue?

Many thanks,

Matthew



--
 The Wellcome Sanger Institute is operated by Genome Research
 Limited, a charity registered in England with number 1021457 and a
 company registered in England with number 2742969, whose registered
 office is 215 Euston Road, London, NW1 2BE.
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Re: [R-pkg-devel] Rmarkdown vignette yields r inline warning on windows build

2020-05-01 Thread Spencer Graves 
In R Markdown, you can say, "The number `r round(pi)` will appear as 
"The number 3".  If you write "`round`", it should display "round" in a 
special font for R commands.  Meanwhile "$\sigma > 2\Phi^{-1}(q)$" 
passes the string between the two dollar signs to a LaTeX processor.  If 
you already know this, I apologize for wasting your time with this 
reply.  If you did not know this, it might help you understand the 
problem.  Spencer Graves


On 2020-05-01 14:39, Max Turgeon wrote:
> Since you're looking for suggestions and that's all I have:
>
>
> Could it be the space between the tick mark and the r? For example, does 
> replacing ` round` with `round` (and all other instances) fix the issue?
>
>
> Max Turgeon
> Assistant Professor
> Department of Statistics
> Department of Computer Science
> University of Manitoba
> maxturgeon.ca
>
>
> 
> From: R-package-devel  on behalf of 
> Matthew Young 
> Sent: May 1, 2020 2:24:40 PM
> To: r-package-devel@r-project.org
> Subject: [R-pkg-devel] Rmarkdown vignette yields r inline warning on windows 
> build
>
> 
> Caution: This message was sent from outside the University of Manitoba.
> 
>
> I am trying to submit a package to CRAN that includes a vignette built using 
> rmarkdown.  It passes fine on the machines I have access to (ubuntu and osx). 
>  When I submit to CRAN using the form, it passes the Debian checks, but fails 
> on windows with the following WARNING:
>
> ! Missing $ inserted.
> 
>  $
> l.1030
>
> You may need to add $ $ around a certain inline R expression `r `
>
>
> I�m really not sure what is causing this error or how to debug it.  I do not 
> have any inline r expressions in my vignette (code here 
> https://github.com/constantAmateur/SoupX/blob/devel/vignettes/pbmcTutorial.Rmd).
>   I do have back-ticked expression such as `round`, but they are not executed 
> code.  Can anyone suggest what might be causing this issue?
>
> Many thanks,
>
> Matthew
>
>
>
> --
>   The Wellcome Sanger Institute is operated by Genome Research
>   Limited, a charity registered in England with number 1021457 and a
>   company registered in England with number 2742969, whose registered
>   office is 215 Euston Road, London, NW1 2BE.
>  [[alternative HTML version deleted]]
>
> __
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
>   [[alternative HTML version deleted]]
>
>
> __
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel


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Re: [R-pkg-devel] Rmarkdown vignette yields r inline warning on windows build [EXT]

2020-05-01 Thread Matthew Young 
I’ve tried both ways (with and without a space after the backtick) and get the 
same error.

From: Max Turgeon 
Date: Friday, 1 May 2020 at 20:39
To: Matthew Young , "r-package-devel@r-project.org" 

Subject: Re: Rmarkdown vignette yields r inline warning on windows build [EXT]


Since you're looking for suggestions and that's all I have:



Could it be the space between the tick mark and the r? For example, does 
replacing ` round` with `round` (and all other instances) fix the issue?


Max Turgeon
Assistant Professor
Department of Statistics
Department of Computer Science
University of Manitoba
maxturgeon.ca 
[maxturgeon.ca]




From: R-package-devel  on behalf of 
Matthew Young 
Sent: May 1, 2020 2:24:40 PM
To: r-package-devel@r-project.org
Subject: [R-pkg-devel] Rmarkdown vignette yields r inline warning on windows 
build


Caution: This message was sent from outside the University of Manitoba.


I am trying to submit a package to CRAN that includes a vignette built using 
rmarkdown.  It passes fine on the machines I have access to (ubuntu and osx).  
When I submit to CRAN using the form, it passes the Debian checks, but fails on 
windows with the following WARNING:

! Missing $ inserted.

$
l.1030

You may need to add $ $ around a certain inline R expression `r `


I’m really not sure what is causing this error or how to debug it.  I do not 
have any inline r expressions in my vignette (code here 
https://github.com/constantAmateur/SoupX/blob/devel/vignettes/pbmcTutorial.Rmd 
[github.com]).
  I do have back-ticked expression such as `round`, but they are not executed 
code.  Can anyone suggest what might be causing this issue?

Many thanks,

Matthew



--
 The Wellcome Sanger Institute is operated by Genome Research
 Limited, a charity registered in England with number 1021457 and a
 company registered in England with number 2742969, whose registered
 office is 215 Euston Road, London, NW1 2BE.
[[alternative HTML version deleted]]

__
R-package-devel@r-project.org mailing list
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[stat.ethz.ch]



-- 
 The Wellcome Sanger Institute is operated by Genome Research 
 Limited, a charity registered in England with number 1021457 and a 
 company registered in England with number 2742969, whose registered 
 office is 215 Euston Road, London, NW1 2BE.
[[alternative HTML version deleted]]

__
R-package-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-package-devel