[R-pkg-devel] R-hub PREPERROR on Ubuntu Linux 16.04 LTS, R-release, GCC not on other platforms

2019-11-08 Thread R. Mark Sharp
Should I ignore this problem with regard to going forward with a submission to 
CRAN?

It looks like some CRAN packages that I am dependent on are not available on 
the Ubuntu Linux 16.04 LTS platform.

#> Failed with error: ‘there is no package called ‘shiny’’
#> ERROR: dependency ‘openssl’ is not available for package ‘httr’
#> ERROR: dependency ‘httr’ is not available for package ‘covr’
#> ERROR: dependency ‘httr’ is not available for package ‘Rlabkey’
#> ERROR: dependencies ‘httr’, ‘openssl’ are not available for package ‘pkgdown’
#> ERROR: dependency ‘Rlabkey’ is not available for package ‘nprcmanager’

The following platforms have no errors or warnings and have only the “New 
submission” note.

Windows Server 2008 R2 SP1, R-devel, 32/64 bit
Fedora Linux, R-devel, clang, gfortran

Mark

R. Mark Sharp, Ph.D.
Data Scientist and Biomedical Statistical Consultant
7526 Meadow Green St.
San Antonio, TX 78251
mobile: 210-218-2868
rmsh...@me.com

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Re: [R-pkg-devel] R-hub PREPERROR on Ubuntu Linux 16.04 LTS, R-release, GCC not on other platforms

2019-11-08 Thread Dirk Eddelbuettel


On 8 November 2019 at 10:14, R. Mark Sharp wrote:
| Should I ignore this problem with regard to going forward with a submission 
to CRAN?
| 
| It looks like some CRAN packages that I am dependent on are not available on 
the Ubuntu Linux 16.04 LTS platform.
| 
| #> Failed with error: ‘there is no package called ‘shiny’’
| #> ERROR: dependency ‘openssl’ is not available for package ‘httr’
| #> ERROR: dependency ‘httr’ is not available for package ‘covr’
| #> ERROR: dependency ‘httr’ is not available for package ‘Rlabkey’
| #> ERROR: dependencies ‘httr’, ‘openssl’ are not available for package 
‘pkgdown’
| #> ERROR: dependency ‘Rlabkey’ is not available for package ‘nprcmanager’
| 
| The following platforms have no errors or warnings and have only the “New 
submission” note.
| 
| Windows Server 2008 R2 SP1, R-devel, 32/64 bit
| Fedora Linux, R-devel, clang, gfortran

Are you running this at rhub?

Rhub is a "contributed service" so as the CRAN Checklist [1] says, "results
may differ".  You can file bug reports for rhub; I have done in the past and
it (at times) has lead to changes.

As for your package, it looks like it passes on fully set-up test beds so
it looks like you may be ready for submission.  Only CRAN can tell, and only
will if you actually submit ;-)

Dirk

https://cran.r-project.org/web/packages/submission_checklist.html

-- 
http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

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Re: [R-pkg-devel] Set env variables for cmake

2019-11-08 Thread Kevin Ushey
It would help if you shared your source code, so we know what you've tried.

Presumably, you need to either export the variables you're setting, or
just pass them along when invoking CMake. For example:

ENVVAR=1
export ENVVAR
cmake <...>

or

ENVVAR=1 cmake <...>

Best,
Kevin

On Thu, Nov 7, 2019 at 11:25 PM Sameh M. Abdulah
 wrote:
>
> I am using CMake command inside the configure file to install some 
> dependencies for my package. These CMake commands require setting an 
> environment variable. When I set it inside the configure file, it does not 
> work!. Thus, I have used .Renviron file to set my env variables. This 
> solution works on my machine but it does not work with CRAN and I do not know 
> why. What is the best way to set environment variables for my configure file?
>
>
> --Sameh
>
> [[alternative HTML version deleted]]
>
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