Re: [R-pkg-devel] nativeRoutines error when using roxygen2 in RStudio
Dear Georgi, Thanks for your suggestions. I have tried to install the development version of roxygen2, but to no avail. I don't have a Collate field in DESCRIPTION. devtools::check() gives me: Updating secsse documentation Loading secsse Registered S3 method overwritten by 'dplyr': method from as.data.frame.tbl_df tibble Registered S3 method overwritten by 'geiger': method from unique.multiPhylo ape Error in nativeRoutines[[lib]] <- routines : object 'nativeRoutines' not found Any other suggestions? Cheers, Rampal On 02-Nov-18 08:33, Georgi Boshnakov wrote: > Try installing the latest development version of roxygen2, if you are not > using it already. > There was a bug in the released version preventing installation in some cases. > If you don't want to use development version of roxygen2, > try putting all filenames in the Collate field in DESCRIPTION on one line and > make sure that there is a single space > between them. This should work if your problem is what I think. > > By the way, in such cases you will get more informative messages if you run > devtools::check(). > > -- > Georgi Boshnakov > > > > From: R-package-devel [r-package-devel-boun...@r-project.org] on behalf of > Rampal Etienne [rampaletie...@gmail.com] > Sent: 01 November 2018 22:40 > To: r-package-devel@r-project.org > Subject: [R-pkg-devel] nativeRoutines error when using roxygen2 in RStudio > > Since a few weeks (after updating R-devel and Rtools) I get the > following error when trying to build a package or document it, when > using roxygen2 in RStudio: > > In R CMD INSTALL Error in nativeRoutines[[lib]] <- routines : object > 'nativeRoutines' not found Calls: suppressPackageStartupMessages ... > withCallingHandlers -> -> load_all -> load_dll Execution halted > > When I disable roxygen2, I do not get this error, but of course the > documentation is not created. > > I have installed the latest versions of RStudio, Rtools, R-devel, > roxygen2, pkgload, but the problem persists. > > Does anybody have a clue what is causing this? I am using Windows 10, > and the package contains Fortran code. > > Kind regards, > Rampal Etienne > > [[alternative HTML version deleted]] > > __ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] nativeRoutines error when using roxygen2 in RStudio
Dear Rampal: What version of R are you using? I had this bug appearing a while a go on r-devel on travis (https://stackoverflow.com/questions/52532026/r-object-nativeroutines-not-found/52924244#52924244), it disappeared after a while. Cheers, Guido On 11/6/18 9:27 PM, Rampal Etienne wrote: Dear Georgi, Thanks for your suggestions. I have tried to install the development version of roxygen2, but to no avail. I don't have a Collate field in DESCRIPTION. devtools::check() gives me: Updating secsse documentation Loading secsse Registered S3 method overwritten by 'dplyr': method from as.data.frame.tbl_df tibble Registered S3 method overwritten by 'geiger': method from unique.multiPhylo ape Error in nativeRoutines[[lib]] <- routines : object 'nativeRoutines' not found Any other suggestions? Cheers, Rampal On 02-Nov-18 08:33, Georgi Boshnakov wrote: Try installing the latest development version of roxygen2, if you are not using it already. There was a bug in the released version preventing installation in some cases. If you don't want to use development version of roxygen2, try putting all filenames in the Collate field in DESCRIPTION on one line and make sure that there is a single space between them. This should work if your problem is what I think. By the way, in such cases you will get more informative messages if you run devtools::check(). -- Georgi Boshnakov From: R-package-devel [r-package-devel-boun...@r-project.org] on behalf of Rampal Etienne [rampaletie...@gmail.com] Sent: 01 November 2018 22:40 To: r-package-devel@r-project.org Subject: [R-pkg-devel] nativeRoutines error when using roxygen2 in RStudio Since a few weeks (after updating R-devel and Rtools) I get the following error when trying to build a package or document it, when using roxygen2 in RStudio: In R CMD INSTALL Error in nativeRoutines[[lib]] <- routines : object 'nativeRoutines' not found Calls: suppressPackageStartupMessages ... withCallingHandlers -> -> load_all -> load_dll Execution halted When I disable roxygen2, I do not get this error, but of course the documentation is not created. I have installed the latest versions of RStudio, Rtools, R-devel, roxygen2, pkgload, but the problem persists. Does anybody have a clue what is causing this? I am using Windows 10, and the package contains Fortran code. Kind regards, Rampal Etienne [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] nativeRoutines error when using roxygen2 in RStudio
Hi Guido, I am using the latest version of R-devel (on Windows). I've been having these problems since I updated R-devel mid-October (my previous version was a few months old). I have been updating R-devel since then, hoping that the problem would be disappear, but it is still there. Cheers, Rampal On 06-Nov-18 22:13, Guido Kraemer wrote: Dear Rampal: What version of R are you using? I had this bug appearing a while a go on r-devel on travis (https://stackoverflow.com/questions/52532026/r-object-nativeroutines-not-found/52924244#52924244), it disappeared after a while. Cheers, Guido On 11/6/18 9:27 PM, Rampal Etienne wrote: Dear Georgi, Thanks for your suggestions. I have tried to install the development version of roxygen2, but to no avail. I don't have a Collate field in DESCRIPTION. devtools::check() gives me: Updating secsse documentation Loading secsse Registered S3 method overwritten by 'dplyr': method from as.data.frame.tbl_df tibble Registered S3 method overwritten by 'geiger': method from unique.multiPhylo ape Error in nativeRoutines[[lib]] <- routines : object 'nativeRoutines' not found Any other suggestions? Cheers, Rampal On 02-Nov-18 08:33, Georgi Boshnakov wrote: Try installing the latest development version of roxygen2, if you are not using it already. There was a bug in the released version preventing installation in some cases. If you don't want to use development version of roxygen2, try putting all filenames in the Collate field in DESCRIPTION on one line and make sure that there is a single space between them. This should work if your problem is what I think. By the way, in such cases you will get more informative messages if you run devtools::check(). -- Georgi Boshnakov From: R-package-devel [r-package-devel-boun...@r-project.org] on behalf of Rampal Etienne [rampaletie...@gmail.com] Sent: 01 November 2018 22:40 To: r-package-devel@r-project.org Subject: [R-pkg-devel] nativeRoutines error when using roxygen2 in RStudio Since a few weeks (after updating R-devel and Rtools) I get the following error when trying to build a package or document it, when using roxygen2 in RStudio: In R CMD INSTALL Error in nativeRoutines[[lib]] <- routines : object 'nativeRoutines' not found Calls: suppressPackageStartupMessages ... withCallingHandlers -> -> load_all -> load_dll Execution halted When I disable roxygen2, I do not get this error, but of course the documentation is not created. I have installed the latest versions of RStudio, Rtools, R-devel, roxygen2, pkgload, but the problem persists. Does anybody have a clue what is causing this? I am using Windows 10, and the package contains Fortran code. Kind regards, Rampal Etienne [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] nativeRoutines error when using roxygen2 in RStudio
On 06/11/2018 3:27 PM, Rampal Etienne wrote: Dear Georgi, Thanks for your suggestions. I have tried to install the development version of roxygen2, but to no avail. I don't have a Collate field in DESCRIPTION. devtools::check() gives me: Updating secsse documentation Loading secsse Registered S3 method overwritten by 'dplyr': method from as.data.frame.tbl_df tibble Registered S3 method overwritten by 'geiger': method from unique.multiPhylo ape Error in nativeRoutines[[lib]] <- routines : object 'nativeRoutines' not found Do you get that error if you run "R CMD check" on the tarball of your package? If so, how comfortable are you with debugging R code? I can tell you how to debug the check process, but it's a little tricky. Duncan Murdoch Any other suggestions? Cheers, Rampal On 02-Nov-18 08:33, Georgi Boshnakov wrote: Try installing the latest development version of roxygen2, if you are not using it already. There was a bug in the released version preventing installation in some cases. If you don't want to use development version of roxygen2, try putting all filenames in the Collate field in DESCRIPTION on one line and make sure that there is a single space between them. This should work if your problem is what I think. By the way, in such cases you will get more informative messages if you run devtools::check(). -- Georgi Boshnakov From: R-package-devel [r-package-devel-boun...@r-project.org] on behalf of Rampal Etienne [rampaletie...@gmail.com] Sent: 01 November 2018 22:40 To: r-package-devel@r-project.org Subject: [R-pkg-devel] nativeRoutines error when using roxygen2 in RStudio Since a few weeks (after updating R-devel and Rtools) I get the following error when trying to build a package or document it, when using roxygen2 in RStudio: In R CMD INSTALL Error in nativeRoutines[[lib]] <- routines : object 'nativeRoutines' not found Calls: suppressPackageStartupMessages ... withCallingHandlers -> -> load_all -> load_dll Execution halted When I disable roxygen2, I do not get this error, but of course the documentation is not created. I have installed the latest versions of RStudio, Rtools, R-devel, roxygen2, pkgload, but the problem persists. Does anybody have a clue what is causing this? I am using Windows 10, and the package contains Fortran code. Kind regards, Rampal Etienne [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] nativeRoutines error when using roxygen2 in RStudio
Dear Duncan,
I don't get it when using R CMD check.
I only get it when building/loading using roxygen2 or when I call
load_all (which roxygen2 does too, I think). load_all calls load_dll
which then throws this error. I have registered my routines in
R_init_secsse.c:
void R_init_secsse(DllInfo *dll)
{
R_registerRoutines(dll, NULL, NULL, FortranEntries, NULL);
R_useDynamicSymbols(dll, FALSE);
}
Any suggestions?
Cheers, Rampal
On 06-Nov-18 22:50, Duncan Murdoch wrote:
On 06/11/2018 3:27 PM, Rampal Etienne wrote:
Dear Georgi,
Thanks for your suggestions. I have tried to install the development
version of roxygen2, but to no avail.
I don't have a Collate field in DESCRIPTION.
devtools::check() gives me:
Updating secsse documentation Loading secsse Registered S3 method
overwritten by 'dplyr': method from as.data.frame.tbl_df tibble
Registered S3 method overwritten by 'geiger': method from
unique.multiPhylo ape Error in nativeRoutines[[lib]] <- routines :
object 'nativeRoutines' not found
Do you get that error if you run "R CMD check" on the tarball of your
package?
If so, how comfortable are you with debugging R code? I can tell you
how to debug the check process, but it's a little tricky.
Duncan Murdoch
Any other suggestions?
Cheers, Rampal
On 02-Nov-18 08:33, Georgi Boshnakov wrote:
Try installing the latest development version of roxygen2, if you
are not using it already.
There was a bug in the released version preventing installation in
some cases.
If you don't want to use development version of roxygen2,
try putting all filenames in the Collate field in DESCRIPTION on one
line and make sure that there is a single space
between them. This should work if your problem is what I think.
By the way, in such cases you will get more informative messages if
you run devtools::check().
--
Georgi Boshnakov
From: R-package-devel [r-package-devel-boun...@r-project.org] on
behalf of Rampal Etienne [rampaletie...@gmail.com]
Sent: 01 November 2018 22:40
To: r-package-devel@r-project.org
Subject: [R-pkg-devel] nativeRoutines error when using roxygen2 in
RStudio
Since a few weeks (after updating R-devel and Rtools) I get the
following error when trying to build a package or document it, when
using roxygen2 in RStudio:
In R CMD INSTALL Error in nativeRoutines[[lib]] <- routines : object
'nativeRoutines' not found Calls: suppressPackageStartupMessages ...
withCallingHandlers -> -> load_all -> load_dll Execution
halted
When I disable roxygen2, I do not get this error, but of course the
documentation is not created.
I have installed the latest versions of RStudio, Rtools, R-devel,
roxygen2, pkgload, but the problem persists.
Does anybody have a clue what is causing this? I am using Windows 10,
and the package contains Fortran code.
Kind regards,
Rampal Etienne
[[alternative HTML version deleted]]
__
R-package-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-package-devel
[[alternative HTML version deleted]]
__
R-package-devel@r-project.org mailing list
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Re: [R-pkg-devel] nativeRoutines error when using roxygen2 in RStudio
On 06/11/2018 5:17 PM, Rampal Etienne wrote:
Dear Duncan,
I don't get it when using R CMD check.
I only get it when building/loading using roxygen2 or when I call
load_all (which roxygen2 does too, I think). load_all calls load_dll
which then throws this error. I have registered my routines in
R_init_secsse.c:
void R_init_secsse(DllInfo *dll)
{
R_registerRoutines(dll, NULL, NULL, FortranEntries, NULL);
R_useDynamicSymbols(dll, FALSE);
}
Any suggestions?
Nope! Sounds like a bug in devtools/roxygen2, but I don't know either
of those packages well.
Duncan Murdoch
Cheers, Rampal
On 06-Nov-18 22:50, Duncan Murdoch wrote:
On 06/11/2018 3:27 PM, Rampal Etienne wrote:
Dear Georgi,
Thanks for your suggestions. I have tried to install the development
version of roxygen2, but to no avail.
I don't have a Collate field in DESCRIPTION.
devtools::check() gives me:
Updating secsse documentation Loading secsse Registered S3 method
overwritten by 'dplyr': method from as.data.frame.tbl_df tibble
Registered S3 method overwritten by 'geiger': method from
unique.multiPhylo ape Error in nativeRoutines[[lib]] <- routines :
object 'nativeRoutines' not found
Do you get that error if you run "R CMD check" on the tarball of your
package?
If so, how comfortable are you with debugging R code? I can tell you
how to debug the check process, but it's a little tricky.
Duncan Murdoch
Any other suggestions?
Cheers, Rampal
On 02-Nov-18 08:33, Georgi Boshnakov wrote:
Try installing the latest development version of roxygen2, if you
are not using it already.
There was a bug in the released version preventing installation in
some cases.
If you don't want to use development version of roxygen2,
try putting all filenames in the Collate field in DESCRIPTION on one
line and make sure that there is a single space
between them. This should work if your problem is what I think.
By the way, in such cases you will get more informative messages if
you run devtools::check().
--
Georgi Boshnakov
From: R-package-devel [r-package-devel-boun...@r-project.org] on
behalf of Rampal Etienne [rampaletie...@gmail.com]
Sent: 01 November 2018 22:40
To: r-package-devel@r-project.org
Subject: [R-pkg-devel] nativeRoutines error when using roxygen2 in
RStudio
Since a few weeks (after updating R-devel and Rtools) I get the
following error when trying to build a package or document it, when
using roxygen2 in RStudio:
In R CMD INSTALL Error in nativeRoutines[[lib]] <- routines : object
'nativeRoutines' not found Calls: suppressPackageStartupMessages ...
withCallingHandlers -> -> load_all -> load_dll Execution
halted
When I disable roxygen2, I do not get this error, but of course the
documentation is not created.
I have installed the latest versions of RStudio, Rtools, R-devel,
roxygen2, pkgload, but the problem persists.
Does anybody have a clue what is causing this? I am using Windows 10,
and the package contains Fortran code.
Kind regards,
Rampal Etienne
[[alternative HTML version deleted]]
__
R-package-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-package-devel
[[alternative HTML version deleted]]
__
R-package-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-package-devel
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