Re: [R] building compiled help html files

2010-11-03 Thread Edison

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[R] Help with sample size calculation for inter-rater reliability study

2014-11-08 Thread Edison Iglesias de Oliveira
Dear R masters,

I am attempting to calculate the sample size for an inter-rater reliability
study using the N2.cohen.kappa function of the irr package. 

It is a study of 2 raters for a single item with three possible ordinal
outcomes. The expected marginal probabilities for those outcomes are 0.2,
0.6 and 0.2. 

The null hypothesis is that kappa < 0.8
The alternative hypotheis is kappa >=0.8

The following example comes from the irr package manual

require(lpSolve)
 # Testing H0: kappa = 0.4 vs. HA: kappa > 0.4 (=0.6) given that
 # Marginal Probabilities by two raters are (0.2, 0.25, 0.55).
 #
 # one sided test with 80% power:
 N2.cohen.kappa(c(0.2, 0.25, 0.55), k1=0.6, k0=0.4)
 # one sided test with 90% power:
 N2.cohen.kappa(c(0.2, 0.25, 0.55), k1=0.6, k0=0.4, power=0.9)
 # Marginal Probabilities by two raters are (0.2, 0.05, 0.2, 0.05, 0.2,
0.3)
 # Testing H0: kappa = 0.1 vs. HA: kappa > 0.1 (=0.5) given that
 #
 # one sided test with 80% power:
 N2.cohen.kappa(c(0.2, 0.05, 0.2, 0.05, 0.2, 0.3), k1=0.5, k0=0.1)


In my case I would be testing H0: kappa < 0.8 vs HA: kappa >= 08 given
Marginal probabilities by two raters as (0.2, 0.6, 0.2)

However the following argument will not work

N2.cohen.kappa (mrg=c(0.2,0.6,0.2), k1>=0.8, k0<0.8, alpha=0.05, power= 0.8,
twosided=FALSE)

I have also tried the kappaSize package without success

Power3Cats(kappa0<0.8, kappa1>=0.8, props=c(0.2,0.6,0.2), raters=2,
alpha=0.05, power=0.80)

Can anyone offer me some guidance?

Best regards,

Edison  
  
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[R] (sem assunto)

2008-01-19 Thread Edison Iglesias de Oliveira Vidal

I have been searching without success to find out how to test for the 
assumption of linear relationship between the indenpendent variables and the 
logit of the dependent variable in multiple logistic regression models using R. 
I shall be glad for any advice.

best regards,

Edison Iglesias de Oliveira Vidal,  MD
Home Care Department, Hospital Israelita Albert Einstein
São Paulo, Brazil



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