Re: [R] Matching rows in a Data set? I'm Stuck!!

2010-03-03 Thread BioStudent

I have not explained this properly.

I meant to say if the ID vales of the rows in each file match, print the
data into a new dataframe with this structure 

ID DATA1
2345 VALUE1 VALUE2

where value1 is from the first dataset and value2 is from the 2nd
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[R] Matching rows in a Data set? I'm Stuck!!

2010-03-03 Thread BioStudent



Hi, I'm having (yet another) problem with R.  

I have a few data sets that have this sort of format

dataset1
ID DATA
1234 value
2345 value
3456 value

dataset2
ID DATA
 value
2345 value
 value

What i really want to do is write an R script that says "if the ID of
dataset1 and 2 match (2nd row), print out that whole row into a new
dataset3". No idea how to do that though. Normally I would just write out
the files to a txt file then write a perl script that would do just that.
However these files are HUGE and perl will take forever to do this!! I'm
hoping theres a quicker solution in R...

Any help appreciated

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Re: [R] Matching rows in a Data set? I'm Stuck!!

2010-03-03 Thread BioStudent

Unfortunately its complaining that 'by.x' and 'by.y' specify different
numbers of columns'.

I don't really see why that matters if your matching tbh... 

I'm having a few problems. Merge is definitely what I want but my files are
way too big and i'm having memory trouble. Plus I figures out the ID column
isn't unique but I guess i can just use by.y="anotheridentifyingcolumn" to
get around that.
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Re: [R] Matching rows in a Data set? I'm Stuck!!

2010-03-03 Thread BioStudent

Thanks!

I'm just trying to do it now but having issues with memory...

test <- merge(file1, file2, by.x = "col1")

will this give me the output I was hoping for

ID VALUE1 VALUE2

?

Thanks
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[R] Mutliple sets of data in one dataset....Need a loop?

2010-01-20 Thread BioStudent

Hi

I'm hoping someone can help me I am a relative newbie to R.

I have data that is in a similar format to this...

Experiment Score1 Score2
X -0.85 -0.02
X -1.21 -0.02
X  1.05  0.09
Y -1.12 -0.07
Y -0.27 -0.07
Y -0.93 -0.08
Z 1.1 -0.03
Z 2.4 0.09
Z -1.0 0.09

Now I can easily have a look at the overall correlation of score 1 and 2 by
doing this
plot(data[,2], data[,3])   or
fit <- lm(data[,2] ~ data[,3]

BUT! I really want to look at the correlations within each experiment type
so ideally a multiple plot per page of each correlation within an experiment
- and/or a way of looping through the data to get the simple linear
regression for each experiment for scores 1 and 2. This looks like an easy
example but I have thousands of results so it would be really hand to find
away of doing this quickly!!

Let me know if you need more explaining...

E
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Re: [R] Mutliple sets of data in one dataset....Need a loop?

2010-01-21 Thread BioStudent

Hi Thanks for all your help

Its a little difficult to follow those examples as all seem so different and
its hard to see how I do what I want to my data from the help files but i'll
try...
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