[Rd] Question of R CMD check
Hi all,
Today, i just installed the newest R version 2.10.1 and other necessary
tools for building R package under windows,e.g. Rtools, perl. All are the
newest version.
After the correct configuration under windows (configuration should be
correct), i use it to re-check my old package. I found the following prolem
when checking EXAMPLEs in each function, which did not exist before this
re-installation.
* checking examples ... ERROR
Running examples in 'stam-Ex.R' failed.
I used "\dontrun{} % enddontrun" in all the examples of my functions that
should be no problem, i think. I checked my package before and did not find
errors. I also browsed the checking results in 'stam-Ex.R'. It listed all
the example codes in that file, something like this,
cleanEx(); nameEx("stcdt")
### * stcdt
flush(stderr()); flush(stdout())
###example codes
I did not met this problem before. Any ideas on solving this?
Thanks a lot.
--
-
Jane Chang
Queen's
[[alternative HTML version deleted]]
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Question of R CMD check
Hi Duncan,
Thanks for reminding me. See below for the error information from *.Rout
file
It seems that 'pkgname' was not found. I am not sure whether there is some
problem with my functions or it is a little bug.
Thanks a lot.
###
> assign("ptime", proc.time(), pos = "CheckExEnv")
> ## at least one package changes these via ps.options(), so do this
> ## before loading the package.
> ## Use postscript as incomplete files may be viewable, unlike PDF.
> ## Choose a size that is close to on-screen devices, fix paper
> grDevices::ps.options(width = 7, height = 7, paper = "a4", reset = TRUE)
> grDevices::postscript(paste(pkgname, "-Ex.ps", sep=""))
Error in paste(pkgname, "-Ex.ps", sep = "") : object 'pkgname' not found
Calls: -> checkIntFormat -> gsub -> paste
Execution halted
2010/4/23 Duncan Murdoch
> On 21/04/2010 9:48 PM, rusers.sh wrote:
>
>> Hi all,
>>Today, i just installed the newest R version 2.10.1 and other necessary
>> tools for building R package under windows,e.g. Rtools, perl. All are the
>> newest version.
>> After the correct configuration under windows (configuration should be
>> correct), i use it to re-check my old package. I found the following
>> prolem
>> when checking EXAMPLEs in each function, which did not exist before this
>> re-installation.
>>
>> * checking examples ... ERROR
>> Running examples in 'stam-Ex.R' failed.
>>
>> I used "\dontrun{} % enddontrun" in all the examples of my functions that
>> should be no problem, i think. I checked my package before and did not
>> find
>> errors. I also browsed the checking results in 'stam-Ex.R'. It listed all
>> the example codes in that file, something like this,
>> cleanEx(); nameEx("stcdt")
>> ### * stcdt
>> flush(stderr()); flush(stdout())
>> ###example codes
>>
>> I did not met this problem before. Any ideas on solving this?
>> Thanks a lot.
>>
>>
>>
> You need to show us the end of the stam-Ex.Rout file. It will contain the
> error message.
>
> Duncan Murdoch
>
>
--
-
Jane Chang
Queen's
[[alternative HTML version deleted]]
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Question of R CMD check
Hi Duncan,
Enclosed is the example package and the checking results. No rm() or
remove() in the example. Before this re-installation of R and other tools
(e.g. Rtools), there are no errors for package checking.
Thanks.
2010/4/23 Duncan Murdoch
> On 23/04/2010 1:19 PM, rusers.sh wrote:
>
>> Hi Duncan,
>> Thanks for reminding me. See below for the error information from *.Rout
>> file
>> It seems that 'pkgname' was not found. I am not sure whether there is
>> some
>> problem with my functions or it is a little bug.
>> Thanks a lot.
>> ###
>>
>>
>>> assign("ptime", proc.time(), pos = "CheckExEnv")
>>> ## at least one package changes these via ps.options(), so do this
>>> ## before loading the package.
>>> ## Use postscript as incomplete files may be viewable, unlike PDF.
>>> ## Choose a size that is close to on-screen devices, fix paper
>>> grDevices::ps.options(width = 7, height = 7, paper = "a4", reset = TRUE)
>>> grDevices::postscript(paste(pkgname, "-Ex.ps", sep=""))
>>>
>>>
>> Error in paste(pkgname, "-Ex.ps", sep = "") : object 'pkgname' not found
>> Calls: -> checkIntFormat -> gsub -> paste
>> Execution halted
>>
>>
>
> The very first line of stam-Ex.R should be
>
> pkgname <- "stam"
>
> Is it? If not, I'd like to see the package; could you send me a copy? If
> it is, then something in one of your examples is messing with it. Do you
> have any calls to rm() or remove() in your examples?
>
> Duncan Murdoch
>
> 2010/4/23 Duncan Murdoch
>>
>>
>>
>>> On 21/04/2010 9:48 PM, rusers.sh wrote:
>>>
>>>
>>>
>>>> Hi all,
>>>> Today, i just installed the newest R version 2.10.1 and other
>>>> necessary
>>>> tools for building R package under windows,e.g. Rtools, perl. All are
>>>> the
>>>> newest version.
>>>> After the correct configuration under windows (configuration should be
>>>> correct), i use it to re-check my old package. I found the following
>>>> prolem
>>>> when checking EXAMPLEs in each function, which did not exist before this
>>>> re-installation.
>>>>
>>>> * checking examples ... ERROR
>>>> Running examples in 'stam-Ex.R' failed.
>>>>
>>>> I used "\dontrun{} % enddontrun" in all the examples of my functions
>>>> that
>>>> should be no problem, i think. I checked my package before and did not
>>>> find
>>>> errors. I also browsed the checking results in 'stam-Ex.R'. It listed
>>>> all
>>>> the example codes in that file, something like this,
>>>> cleanEx(); nameEx("stcdt")
>>>> ### * stcdt
>>>> flush(stderr()); flush(stdout())
>>>> ###example codes
>>>>
>>>> I did not met this problem before. Any ideas on solving this?
>>>> Thanks a lot.
>>>>
>>>>
>>>>
>>>>
>>>>
>>> You need to show us the end of the stam-Ex.Rout file. It will contain
>>> the
>>> error message.
>>>
>>> Duncan Murdoch
>>>
>>>
>>>
>>>
>>
>>
>>
>>
>
>
--
-
Jane Chang
Queen's
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Question of R CMD check
Hi all,
I find the problem.See below.
Today, i installed the newest R-VERSION2.11.0 for checking. Different
error occurred. I checked the log and found 'Hmisc' package caused this. At
present, binary package was not provided. After i installed an old version
of 'Hmisc' package, it works very well.
I think there should be no problem for R. It may be caused by
the dependent package 'Hmisc' that has no newest binary package in the
CRAN. Sorry about this.
2010/4/23 rusers.sh
> Hi Duncan,
> Enclosed is the example package and the checking results. No rm() or
> remove() in the example. Before this re-installation of R and other tools
> (e.g. Rtools), there are no errors for package checking.
> Thanks.
>
>
> 2010/4/23 Duncan Murdoch
>
>> On 23/04/2010 1:19 PM, rusers.sh wrote:
>>
>>> Hi Duncan,
>>> Thanks for reminding me. See below for the error information from *.Rout
>>> file
>>> It seems that 'pkgname' was not found. I am not sure whether there is
>>> some
>>> problem with my functions or it is a little bug.
>>> Thanks a lot.
>>> ###
>>>
>>>
>>>> assign("ptime", proc.time(), pos = "CheckExEnv")
>>>> ## at least one package changes these via ps.options(), so do this
>>>> ## before loading the package.
>>>> ## Use postscript as incomplete files may be viewable, unlike PDF.
>>>> ## Choose a size that is close to on-screen devices, fix paper
>>>> grDevices::ps.options(width = 7, height = 7, paper = "a4", reset = TRUE)
>>>> grDevices::postscript(paste(pkgname, "-Ex.ps", sep=""))
>>>>
>>>>
>>> Error in paste(pkgname, "-Ex.ps", sep = "") : object 'pkgname' not found
>>> Calls: -> checkIntFormat -> gsub -> paste
>>> Execution halted
>>>
>>>
>>
>> The very first line of stam-Ex.R should be
>>
>> pkgname <- "stam"
>>
>> Is it? If not, I'd like to see the package; could you send me a copy? If
>> it is, then something in one of your examples is messing with it. Do you
>> have any calls to rm() or remove() in your examples?
>>
>> Duncan Murdoch
>>
>> 2010/4/23 Duncan Murdoch
>>>
>>>
>>>
>>>> On 21/04/2010 9:48 PM, rusers.sh wrote:
>>>>
>>>>
>>>>
>>>>> Hi all,
>>>>> Today, i just installed the newest R version 2.10.1 and other
>>>>> necessary
>>>>> tools for building R package under windows,e.g. Rtools, perl. All are
>>>>> the
>>>>> newest version.
>>>>> After the correct configuration under windows (configuration should be
>>>>> correct), i use it to re-check my old package. I found the following
>>>>> prolem
>>>>> when checking EXAMPLEs in each function, which did not exist before
>>>>> this
>>>>> re-installation.
>>>>>
>>>>> * checking examples ... ERROR
>>>>> Running examples in 'stam-Ex.R' failed.
>>>>>
>>>>> I used "\dontrun{} % enddontrun" in all the examples of my functions
>>>>> that
>>>>> should be no problem, i think. I checked my package before and did not
>>>>> find
>>>>> errors. I also browsed the checking results in 'stam-Ex.R'. It listed
>>>>> all
>>>>> the example codes in that file, something like this,
>>>>> cleanEx(); nameEx("stcdt")
>>>>> ### * stcdt
>>>>> flush(stderr()); flush(stdout())
>>>>> ###example codes
>>>>>
>>>>> I did not met this problem before. Any ideas on solving this?
>>>>> Thanks a lot.
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>> You need to show us the end of the stam-Ex.Rout file. It will contain
>>>> the
>>>> error message.
>>>>
>>>> Duncan Murdoch
>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>>
>>
>>
>
>
> --
> -
> Jane Chang
> Queen's
>
--
-
Jane Chang
Queen's
[[alternative HTML version deleted]]
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
