[Rd] bug in cut.POSIXt (with patch) (PR#14208)

2010-02-08 Thread diggsb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__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel


Re: [Rd] bug in cut.POSIXt (with patch) (PR#14208)

2010-02-08 Thread diggsb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[Rd] Wrong behavior of lines.survfit for conf.int="only" (PR#13171)

2008-10-16 Thread diggsb
Full_Name: Brian Diggs
Version: 2.7.2 (2008-08-25)
OS: mingw32 (Windows XP Professional)
Submission from: (NULL) (137.53.146.55)


Description of problem:
The documentation of lines.survfit states that if it is called with
conf.int="only" that the confidence intervals of the survival curve will be
drawn but that the survival curve itself will not. Actual behavior is that both
the confidence intervals and the survival curve are drawn, the same as if
conf.int=TRUE.

Steps to reproduce the problem:
library(survival)
data(cancer)
km <- survfit(Surv(time,status), data=cancer)
plot(km, col=0) #lines drawn in background color, needed to set up the axes
lines(km,conf.int="only") #should draw only the confidence intervals, does draw
both

R version:
platform   i386-pc-mingw32 
arch   i386
os mingw32 
system i386, mingw32   
status 
major  2   
minor  7.2 
year   2008
month  08  
day25  
svn rev46428   
language   R   
version.string R version 2.7.2 (2008-08-25)

survival package version:
Version:   2.34-1
Date:  2008-03-31
Packaged:  Wed Apr 2 09:02:54 2008; hornik
Built: R 2.7.2; i386-pc-mingw32; 2008-08-25 14:57:42; windows

system:
Microsoft Windows XP
Professional
Version 2002
Service Pack 3

__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel


Re: [Rd] Wrong behavior of lines.survfit for conf.int="only" (PR#13180)

2008-10-20 Thread diggsb
SSBkb3dubG9hZGVkIHRoZSBzb3VyY2UgZm9yIHN1cnZpdmFsIGFuZCBJIHRoaW5rIEkgZm91bmQg
dGhlIGJ1Zy4gIEkgaGF2ZSBub3QgdHJpZWQgdG8gYnVpbGQgdGhlIHBhY2thZ2Ugd2l0aCB0aGlz
IGNoYW5nZSB0byB0ZXN0IGl0LCBidXQganVzdCBkZWZpbmluZyB0aGUgZnVuY3Rpb24gd2l0aCB0
aGlzIGNoYW5nZSBzZWVtcyB0byB3b3JrLg0KDQpUaGUgY29kZQ0KDQoJaWYgKGNvbmYuaW50PT0n
b25seScpIHsNCgkgICAgY29uZi5pbnQgPC0gVFJVRQ0KCSAgICBwbG90LnN1cnY8LSBUUlVFDQoJ
ICAgIH0NCg0KU2hvdWxkIGJlDQoNCglpZiAoY29uZi5pbnQ9PSdvbmx5Jykgew0KCSAgICBjb25m
LmludCA8LSBUUlVFDQoJICAgIHBsb3Quc3VydjwtIEZBTFNFDQoJICAgIH0NCg0KLS1CcmlhbiBE
aWdncw0KDQo=

__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel