Re: [Rd] R CMD config for R >= 3.0.1
I need to build R on a Centos machine where I have no admin privileges. Believe I have to build from source, but cannot find the configure script in the source bundle. Am I missing something? -- View this message in context: http://r.789695.n4.nabble.com/R-CMD-config-for-R-3-0-1-tp4667399p4675813.html Sent from the R devel mailing list archive at Nabble.com. __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] R CMD config for R >= 3.0.1
Also have no cooperation from the admin of the machine, so can't ask for a yum install. -- View this message in context: http://r.789695.n4.nabble.com/R-CMD-config-for-R-3-0-1-tp4667399p4675814.html Sent from the R devel mailing list archive at Nabble.com. __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] [MASS.ts] Error 1
I'm making progress building R on Centos, but make is dying just after "begin installing recommended package MASS" where it complains "Error in untar2(tarfile, files, list, exdir, restore_times) : incomplete block on file make[2]: *** [MASS.ts] Error 1 I have $R_SHELL defined as /bin/sh, $R_HOME/bin in my $PATH and I successfully installed the MASS package using: R CMD INSTALL MASS_7.3-29.tar.gz just before I ran make a second time. Do I have a bad package? What can I do? -- View this message in context: http://r.789695.n4.nabble.com/R-CMD-config-for-R-3-0-1-tp4667399p4675838.html Sent from the R devel mailing list archive at Nabble.com. __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] JDK not registered
Given: $JAVA_HOME=~/jdk1.7.0_40 $R_SHELL=/bin/sh $PATH=$R_HOME/bin:$JAVA_HOME/bin:... which jar --> ~/jdk1.7.0_40/bin/jar which javac --> ~/jdk1.7.0_40/bin/javac which javah --> ~/jdk1.7.0_40/bin/javah which java --> '', even though there is one in $JAVA_HOME/bin whereis java --> java: /bin/java /usr/bin/java /sbin/java /usr/sbin/java /lib/java /usr/lib/java /usr/local/bin/java /usr/share/java obviously missing the 1.7.0_40 version in $JAVA_HOME/bin as well as the 1.5 version in /usr/bin If I push into the Rserve package directory and run ./configure, I get: ... checking Java support in R... present: interpreter : '' archiver: '' compiler: '' header prep.: '' cpp flags : '' java libs : '' configure: error: Java Development Kit (JDK) is missing or not registered. Of course that may be because I have not yet successfully completed a make of R if I run R CMD javareconf -e I get: Java interpreter : /home1/optimal1/jdk1.7.0_40/jre/bin/java (why not the one in the jdk/bin?) Error: Could not create the Java Virtual Machine. Error: A fatal exception has occurred. Program will exit. Error occurred during initialization of VM Could not reserve enough space for object heap *** Java interpreter doesn't work properly. I have found that $JAVA_HOME/bin/java (and the one in the jre/bin directory) each complain Error occurred during initialization of VM Could not reserve enough space for object heap Error: Could not create the Java Virtual Machine. Error: A fatal exception has occurred. Program will exit. but, if I define: alias java='$JAVA_HOME/bin/java -Xmx668m -XX:MaxPermSize=128m' I can run java in SSH, though R CMD javareconf -e still fails to initialize the VM. What can I do to get javareconf to run java with those memory limits? -- View this message in context: http://r.789695.n4.nabble.com/R-build-issues-tp4676149p4676286.html Sent from the R devel mailing list archive at Nabble.com. __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
