[Rd] TukeyHSD (PR#10371)
Full_Name: Merlise Clyde
Version: 2.6.0
OS: MAC OS X 10.4.1
Submission from: (NULL) (24.199.155.62)
the print method for function TukeyHSD returns "height" . This occurs with the
example in the documentation:
> summary(fm1 <- aov(breaks ~ wool + tension, data = warpbreaks))
Df Sum Sq Mean Sq F value Pr(>F)
wool 1 450.7 450.7 3.3393 0.073614 .
tension 2 2034.3 1017.1 7.5367 0.001378 **
Residuals 50 6747.9 135.0
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
> TukeyHSD(fm1, "tension", ordered = TRUE)
height
> plot(TukeyHSD(fm1, "tension"))
Error in UseMethod("vcov") : no applicable method for "vcov"
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] PR#10371
Oops -- I should have tested it without libraries loaded :-) The conflict must be with the HH package. I tested the example again using all the packages required by HH and do get the correct results, but once the HH package is loaded, the TukeyHSD function returns "height" and the plot command gives the error described previously. Should I report this bug directly to the authors of the HH package or file a new bug report under HH? Thanks! Merlise -- __ || | Merlise Clyde, Associate Professor| | Department of Statistical Science | | 223E Old Chemistry, BOX 90251 | | Duke University| | Durham, NC 27708-0251 | || | Office Phone: (919) 681-8440 | | Fax: (919) 684-8594 | | email:[EMAIL PROTECTED] | | web: http://www.stat.duke.edu/~clyde | || __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] X11 fails to open (PR#13543)
Full_Name: Merlise Clyde Version: 2.8.1 OS: MAC OS X 10.4.1 Submission from: (NULL) (24.199.155.61) I am running R under X11 on the MAC OS X 10.4.11 and have been having problems with X11 graphics since upgrading to 2.8.+ > plot(1:10) Error in X11(d$display, d$width, d$height, d$pointsize, d$gamma, d$colortype, : unable to start device X11cairo In addition: Warning messages: 1: In function (display = "", width, height, pointsize, gamma, bg, : X11 protocol error: BadValue (integer parameter out of range for operation) 2: In function (display = "", width, height, pointsize, gamma, bg, : cairo error 'out of memory' > I run R under emacs so the display is being set correctly and the device would open under previous verions. I am also encoutering a related problem with running R 2.8.0/2.8.1 on a remote unix box and displaying back to the MAC, where any attempts to open an X11() device causes R to hang. Thanks, Merlise Clyde --please do not edit the information below-- Version: platform = i386-apple-darwin8.11.1 arch = i386 os = darwin8.11.1 system = i386, darwin8.11.1 status = major = 2 minor = 8.1 year = 2008 month = 12 day = 22 svn rev = 47281 language = R version.string = R version 2.8.1 (2008-12-22) Locale: C Search Path: .GlobalEnv, package:stats, package:graphics, package:grDevices, package:utils, package:datasets, package:methods, Autoloads, package:base __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Fontconfig warning with X11() on MAC OS X 10.4
Thanks -- Quartz works perfectly fine under R in an xterm, so do the graphics functions in the Cairo package. I usually run R from emacs under X11 on both my MAC and linux box, so just use to the "default" graphics device opening with no problems after issuing a graphics command rather than having to take the extra step to open the device then issue the plot command. BTW, I have no problem on another MacBook running Leopard. best, Merlise On Wed, 4 Mar 2009, Roger Peng wrote: I realize this doesn't directly answer your question, but seeing as you're on a Mac, have you tried using the quartz device? -roger On Wed, Feb 25, 2009 at 10:27 AM, MerliseClyde wrote: I posted previously about problems with X11() on my MAC using R 2.8.1 . After installing the securilty update for Tiger this morning, X11() now works from an xterm :-) However, I receive the following warnings with any plotting command using the default X11 settings. Fontconfig warning: no elements found. Check configuration. Fontconfig warning: adding /Library/Frameworks/R.framework/Resources/fontconfig/cache Fontconfig warning: adding ~/.fontconfig Everything works fine with the Xlib option: X11(type="Xlib") plot(1:10) # no problems! X11(type="cairo") plot(1:10) Fontconfig warning: no elements found. Check configuration. Fontconfig warning: adding /Library/Frameworks/R.framework/Resources/fontconfig/cache Fontconfig warning: adding ~/.fontconfig subsequent commands with X11/cairo plot with no errors. If I quit R, and start a new session I continue to receive the Fontconfig warning. Any suggestions on what is wrong with my font configuration? (mainly annoying :-) Thanks! Merlise Version: platform = i386-apple-darwin8.11.1 arch = i386 os = darwin8.11.1 system = i386, darwin8.11.1 status = major = 2 minor = 8.1 year = 2008 month = 12 day = 22 svn rev = 47281 language = R version.string = R version 2.8.1 (2008-12-22) -- View this message in context: http://www.nabble.com/Fontconfig-warning-with-X11%28%29-on-MAC-OS-X-10.4-tp22205067p22205067.html Sent from the R devel mailing list archive at Nabble.com. __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel -- __ | | | Merlise Clyde, Associate Professor| | Department of Statistical Science | | 223E Old Chemistry, BOX 90251 | | Duke University| | Durham, NC 27708-0251 | || | Office Phone: (919) 681-8440 | | Fax: (919) 684-8594 | | email:cl...@stat.duke.edu | | web: http://www.stat.duke.edu/~clyde | ||__ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
