[Rd] Library not loaded: /usr/local/lib/libquadmath.0.dylib
Hi all, I tried to load a package which includes a shared object on one of my Macs, and I got an error message below, which suggests that the file " libquadmath.0.dylib" is missing in the /usr/local/lib folder. On my other Mac however, I have no problem loading the package, and the file " libquadmath.0.dylib" is in the /usr/local/lib folder. I wonder where this libquadmath.0.dylib file is from, and how I can install it on the computer where it is missing. Thanks! library(WRScpp) Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/Library/Frameworks/R.framework/Versions/3.1/Resources/library/WRScpp/libs/WRScpp.so': dlopen(/Library/Frameworks/R.framework/Versions/3.1/Resources/library/WRScpp/libs/WRScpp.so, 6): Library not loaded: /usr/local/lib/libquadmath.0.dylib Referenced from: /Library/Frameworks/R.framework/Versions/3.1/Resources/library/WRScpp/libs/WRScpp.so Reason: image not found Error: package or namespace load failed for ‘WRScpp’ [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] invalid operands of types ‘SEXPREC*’ and ‘R_len_t’ to binary ‘operator/’ with Rcpp.
Dear R-Developers,
I just started learning how to use Rcpp. Earlier while using it, I
encountered an error as shown below:
file74d8254b96d4.cpp: In function Rcpp::NumericVector
foo(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector,
Rcpp::Function, Rcpp::Function):
file74d8254b96d4.cpp:10: error: invalid operands of types SEXPREC* and
R_len_t to binary operator/
make: *** [file74d8254b96d4.o] Error 1
Below is a mock function that can reproduce this error. I wonder if anyone
can tell me what is the problem here. Thank you in advance!!
foo<-cppFunction('
NumericVector foo(NumericVector q, NumericVector shape1, NumericVector
shape2, Function pbeta, Function sequence){
NumericVector output(q.size());
output=pbeta(sequence(q.size())/q.size(), shape1, shape2);
return output;
}
')
Best,
Xiao
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Re: [Rd] invalid operands of types ‘SEXPREC*’ an d ‘R_len_t’ to binary ‘operator/’ wit h Rcpp.
Thank you!
I will send my reply to Rcpp-devel from now on Re: my question -. Since I
thought cppFunction() allows vectorized operations, I thought any R
functions I call from R would also allow it. pbeta() within R can be
specified as pbeta(runif(10), 1, 2) where the first argument is a vector.
the function sequence() basically takes an integer, and produce a vector of
consecutive integers starting from 1 to the provided value.
Best,
Xiao
On Tue, May 14, 2013 at 6:39 AM, Dirk Eddelbuettel wrote:
>
> On 13 May 2013 at 21:42, Xiao He wrote:
> | Dear R-Developers,
> |
> | I just started learning how to use Rcpp. Earlier while using it, I
> | encountered an error as shown below:
> |
> | file74d8254b96d4.cpp: In function Rcpp::NumericVector
> | foo(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector,
> | Rcpp::Function, Rcpp::Function):
> | file74d8254b96d4.cpp:10: error: invalid operands of types SEXPREC* and
> | R_len_t to binary operator/
> | make: *** [file74d8254b96d4.o] Error 1
> |
> | Below is a mock function that can reproduce this error. I wonder if
> anyone
> | can tell me what is the problem here. Thank you in advance!!
> |
> | foo<-cppFunction('
> |NumericVector foo(NumericVector q, NumericVector shape1, NumericVector
> | shape2, Function pbeta, Function sequence){
> | NumericVector output(q.size());
> | output=pbeta(sequence(q.size())/q.size(), shape1, shape2);
> | return output;
> | }
> | ')
>
> Really briefly:
>
> 1) Wrong mailing list. Rcpp question are to be sent to rcpp-devel
>
> 2) Possible error in your function setup. Why do you supply pbeta?
> What is sequence?
>
> 3) Error in how you call pbeta. The first argument is a vector, the
> other
> two are scalars.
>
> 4) Compiler error is pretty clear for once: it does not understand the
> division, and you only have one so look there.
>
>
> Here is a minimal working example:
>
> library(Rcpp)
> foo<-cppFunction('NumericVector foo(NumericVector q, double shape1, double
> shape2){
> return pbeta(q, shape1, shape2);
>
>}')
>
> for which I get
>
> R> source('/tmp/foo.R')
> R> foo(seq(0.1, 0.5, by=0.1), 2, 3)
> [1] 0.0523 0.1808 0.3483 0.5248 0.6875
>
> Dirk
>
> --
> Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com
>
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[Rd] Using a shared object without installing a library required by the object.
Dear all, I have a C++ code. To create a shared object from this particular code, I had to install a Fortran library on my computer (Mac). The compiled code runs fine on my computer. However, if I try to dyn.load() said shared object on a computer that does not have the Fortran library installed, the object won't load, and instead I get a message below: usr/local/lib/libgfortran.2.dylib Referenced from: /Users/xh/Downloads/foo2.so I wonder if there is any way to compile the original C++ code such that I can include the necessary components of the Fortran library without having to install the library. Thank you in advance. Best, Xiao [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Using a shared object without installing a library required by the object.
Oops, Sorry, did not reply-all: Thanks for the reply Simon, I have a follow-up question: So after I run the first code you suggested on a computer, the shared object will use the Fortran run-time included in R. Does this code change the shared object itself? Meaning if I send this object to yet another computer and run it, will it know to link to the Fortran included in R? Thanks! -Best, Xiao On Thu, May 23, 2013 at 5:06 PM, Xiao He wrote: > Thanks for the reply Simon, > > I have a follow-up question: > > So after I run the first code you suggested on a computer, the shared > object will use the Fortran run-time included in R. Does this code change > the shared object itself? Meaning if I send this object to yet another > computer and run it, will it know to link to the Fortran included in R? > Thanks! > > Best, > Xiao > > > > On Thu, May 23, 2013 at 4:54 PM, Simon Urbanek < > simon.urba...@r-project.org> wrote: > >> On May 23, 2013, at 4:18 PM, Xiao He wrote: >> >> > Dear all, >> > >> > I have a C++ code. To create a shared object from this particular code, >> I >> > had to install a Fortran library on my computer (Mac). The compiled code >> > runs fine on my computer. However, if I try to dyn.load() said shared >> > object on a computer that does not have the Fortran library installed, >> the >> > object won't load, and instead I get a message below: >> > >> > usr/local/lib/libgfortran.2.dylib >> > Referenced from: /Users/xh/Downloads/foo2.so >> > >> > I wonder if there is any way to compile the original C++ code such that >> I >> > can include the necessary components of the Fortran library without >> having >> > to install the library. >> > >> >> The Fortran run-time is included with R, so you only need to change the >> path -- e.g. >> >> install_name_tool -change /usr/local/lib/libgfortran.2.dylib >> /Library/Frameworks/R.framework/Resources/lib/libgfortran.2.dylib >> /Users/xh/Downloads/foo2.so >> >> You can make that permanent on your build machine by running >> >> install_name_tool -id >> /Library/Frameworks/R.framework/Resources/lib/libgfortran.2.dylib >> /usr/local/lib/libgfortran.2.dylib >> >> If you do that, all code compiled against it subsequently will point to >> the version inside R instead. >> >> Cheers, >> Simon >> >> FWIW: There is R-SIG-Mac for Mac-specific questions. >> >> >> > >> > Thank you in advance. >> > >> > Best, >> > Xiao >> > >> > [[alternative HTML version deleted]] >> > >> > __ >> > R-devel@r-project.org mailing list >> > https://stat.ethz.ch/mailman/listinfo/r-devel >> > >> > >> >> > [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
