[Rd] validspamobject?
Greetings, My R package has been showing warnings of the form: `validspamobject()` is deprecated. Use `validate_spam()` directly None of my code uses the function validspamobject, so it must be a problem in another package I'm calling, possibly spam or spdep. Has this problem occurred with other people? It doesn't have any deleterious effect, but it's annoying. In particular, how do I determine which package is causing this warning? Thanks. Ron B. [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] Thanks for help with validspamobject
Hi, Thanks for all your help. The problem with an error involving validspamobject() has been resolved, as a new version of spdep (0.7-7) was just released and it seems to have stopped using the deprecated function. Ron B. [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] validspamobject?
Hi, I have submitted an updated R package to CRAN, the only problem seems to be the examples take too long to run on Windows and Debian. Several examples take over 10 seconds and the entire set takes around 110 seconds. However, I don't see what the 'target' amount of time is. How much will this need to be sped up to pass the test? Also, are there some tricks to speeding up examples that you have seen? For instance, is it possible to have the identical example in two help files but only have them run once (other than the obvious, which is putting a 'do not run' on one of them, which would seem to invite possible bad code)? Thanks for any information. Ron Barry On Tue, Aug 14, 2018 at 4:56 PM, Ronald Barry wrote: > Greetings, > My R package has been showing warnings of the form: > > `validspamobject()` is deprecated. Use `validate_spam()` directly > > None of my code uses the function validspamobject, so it must be a problem > in another package I'm calling, possibly spam or spdep. Has this problem > occurred with other people? It doesn't have any deleterious effect, but > it's annoying. In particular, how do I determine which package is causing > this warning? Thanks. > > Ron B. > [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Thanks for help with validspamobject
I'm curious about a warning coming from the use of package sqldf. I opened a file and read it using a SQLite select statement: f = "/Users/ronaldbarry/Desktop/Three-Dee/LakeMichDepth.txt" > sql_statement = "select long,lat,depth,(lat - 41.62) as templat, (long + > 88) as templong > from file > where (abs(templat - 0.1*round(templat/0.1,0)) < 0.01)and(abs(templong - > 0.15*round(templong/0.15,0)) < 0.01)" > Mich_depth = sqldf::read.csv.sql(file=f,sql = > sql_statement,header=TRUE,sep=' ') Which ran perfectly well, but it threw a warning: Warning messages: 1: In stopifnot(is.list(hooks)) : closing unused connection 6 (/Users/ronaldbarry/Desktop/Three-Dee/LakeMichDepth.txt) 2: In stopifnot(is.list(hooks)) : closing unused connection 5 (/Users/ronaldbarry/Desktop/Three-Dee/LakeMichDepth.txt) It looks like it would be good practice to close the connection in code, but I don't see any function in sqldf to do so. Is there a way to nicely close the connection, or should I just ignore the warning? Operating system is Mac OSX 13.16 High Sierra, R Studio version 1.1.146, R version 3.5.0. Thanks for any info. On Thu, Aug 16, 2018 at 12:00 PM, Ronald Barry wrote: > Hi, > Thanks for all your help. The problem with an error involving > validspamobject() has been resolved, as a new version of spdep (0.7-7) was > just released and it seems to have stopped using the deprecated function. > > Ron B. > [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] .Rdata file in data subdirectory won't load
Greetings, I wanted to add a dataset to a complete R package I am working on (the package cleanly installs and passes the R CMD check). The data (a matrix) was saved, and the save() image dragged to the /data folder, and is a .Rdata file. It can be read directly using load (see below), but now the R CMD check indicates "subdirectory data contains no datasets" and it won't load using 'data()'. I have read through the R extensions manual and Leisch's tutorial, but can't find a good hint as to what is going wrong. I also tried this with 'polygon1' added to the 'export' in the NAMESPACE, with no effect. > library(latticeDensity) > data(polygon1) Warning message: In data(polygon1) : data set 'polygon1' not found > file.choose() [1] "C:\\Documents and Settings\\Ronald Barry\\My Documents\\latticeDensity\\data\\polygon1.Rdata" > load( "C:\\Documents and Settings\\Ronald Barry\\My > Documents\\latticeDensity\\data\\polygon1.Rdata") > polygon1 [,1] [,2] [1,] 0.6421053 0.8132050 [2,] 0.6845247 0.4814305 [3,] 0.7057345 0.2858322 [4,] 0.6696779 0.2066025 [5,] 0.5190888 0.1892710 [6,] 0.5445405 0.4145805 [7,] 0.5424195 0.6275103 [8,] 0.5233307 0.7983494 [9,] 0.500 0.7983494 [10,] 0.5127258 0.5458047 [11,] 0.5042419 0.3303989 [12,] 0.4851532 0.1348006 [13,] 0.2836606 0.1843191 [14,] 0.2582090 0.3675378 [15,] 0.1733700 0.6795048 [16,] 0.3154753 0.8057772 [17,] 0.2391202 1.0162311 [18,] 0.5381775 0.9592847 [19,] 0.7333071 0.9320495 > Thank you for any pointers. __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] Demo and 00Index problems
Greetings, I am sure I'm missing the obvious, but my 00Index file in the demo subdirectory is not recognized by R CMD check (the demo runs fine, but I get a WARNING from R CMD check about a lack of demo/00Index file. When I invoke demo() in R I see the name but not description of the demo). Is there documentation (other than 'Writing R extensions') on putting together the demo subdirectory? Thanks. Ron Barry __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] Comment on build and INSTALL
Greetings, I have noticed two possible small glitches with build and INSTALL. First, when I run R CMD build latticeDensity, I get the following message: *excluding invalid files from 'latticeDensity' Subdirectory R contains invalid file names: R However, all the files end up in the zip file (or tar) just fine, and neither INSTALL nor check seems to care. The other small glitch is that if you have unmatched brackets in a man file, INSTALL will flag an error and point out that there are unmatched brackets, but will often indicate that the unmatched bracket occurs in a different file that is in perfect shape. Ron Barry -- Please note that the ff...@uaf.edu e-mail address will stop working fairly soon, so you should start using the new address rpbarry AT alaska.edu [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] What to do re 'replacing previous import' errors
After looking at a few discussions of this problem online, I can't seem to find a good solution. When running a CHECK on a package I'm working on (which passed all tests a few years ago), I get the following 'significant warning': Warning: replacing previous import ‘spam::tail’ by ‘utils::tail’ when loading ‘latticeDensity’ Warning: replacing previous import ‘spam::head’ by ‘utils::head’ when loading ‘latticeDensity’ Humorously enough, I don't use the 'tail' function anywhere. It seems to be some sort of namespace clash between spam and utils. In my namespace, I'm importing spam and utils. Is there a fix for this problem? Thanks. [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] Style question
Greetings, When using a 'foreign' function (from another package, say function 'whatever' from package 'foo'), you can of course just require the package and then just have whatever(...) in your code. However, I would like to use the foo::whatever(...) form instead, just for documentation purposes (easier to see what function comes from what package). Is there a cost to doing this? Is it considered good or bad style? Thanks. Ron Barry [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
