[Rd] Error when compiling R with openblas
Hi, I tried to compile R with openblas on a ubuntu 12.04 machine. I have to say that I normally use the package system and that I have no experience with compiling R. I did the following: ./configure --enable-BLAS-shlib --enable-R-shlib LIBnn=lib --with-blas="-L/usr/lib/openblas-base/ -lopenblas" --enable-memory-profiling --with-x=yes go the output: R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory:/usr/local C compiler:gcc -std=gnu99 -g -O2 Fortran 77 compiler: gfortran -g -O2 C++ compiler: g++ -g -O2 C++ 11 compiler: g++ -std=c++0x -g -O2 Fortran 90/95 compiler:gfortran -g -O2 Obj-C compiler: Interfaces supported: X11 External libraries:readline, BLAS(generic), lzma Additional capabilities: PNG, JPEG, NLS Options enabled: shared R library, shared BLAS, R profiling, memory profiling Recommended packages: yes configure: WARNING: you cannot build info or HTML versions of the R manuals Then: make - and then comes the error: make[4]: Entering directory `/home/ab/Downloads/R-3.1.0/src/main' make[4]: Leaving directory `/home/ab/Downloads/R-3.1.0/src/main' make[3]: Leaving directory `/home/ab/Downloads/R-3.1.0/src/main' make[3]: Entering directory `/home/ab/Downloads/R-3.1.0/src/main' gcc -std=gnu99 -Wl,--export-dynamic -fopenmp -L/usr/local/lib -o R.bin Rmain.o -L../../lib -lR -lRblas ../../lib/libR.so: undefined reference to `drot_' ../../lib/libR.so: undefined reference to `dtrsm_' ../../lib/libR.so: undefined reference to `dswap_' ../../lib/libR.so: undefined reference to `dcopy_' ../../lib/libR.so: undefined reference to `ddot_' ../../lib/libR.so: undefined reference to `dgemm_' ../../lib/libR.so: undefined reference to `dscal_' ../../lib/libR.so: undefined reference to `dnrm2_' ../../lib/libR.so: undefined reference to `dsyrk_' ../../lib/libR.so: undefined reference to `dasum_' ../../lib/libR.so: undefined reference to `daxpy_' ../../lib/libR.so: undefined reference to `drotg_' ../../lib/libR.so: undefined reference to `zgemm_' collect2: ld returned 1 exit status make[3]: *** [R.bin] Error 1 make[3]: Leaving directory `/home/ab/Downloads/R-3.1.0/src/main' make[2]: *** [R] Error 2 make[2]: Leaving directory `/home/ab/Downloads/R-3.1.0/src/main' make[1]: *** [R] Error 1 make[1]: Leaving directory `/home/ab/Downloads/R-3.1.0/src' make: *** [R] Error 1 I am wondering why libR.so wants to find these functions and not libRblas.so. The lib libRblas.so can be found in > locate libRblas.so /home/ab/Downloads/R-3.1.0/lib/libRblas.so /home/ab/Downloads/R-3.1.0/src/extra/blas/libRblas.so they have both the same size. can anyone help me with this? cheers, alex __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] Problems with building a private R-package with Fortran source under Windows
Hi, I recently managed to port the slicot library (http://slicot.org/) to R. I created a new package, put the fortran libs into the src directory together with a Makevars file that include the line: PKG_LIBS=$(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) R CMD check did run through on my ubuntu 14.04 64bit machine with 1 warning and 4 notes. Now I wanted to create a Windows version of that package by simply sending it to http://win-builder.r-project.org/ and because I am not capable of compiling on Windows. As a respone I got the following error message: installing *source* package 'slicot' ... ** libs *** arch - i386 gfortran -O3 -mtune=core2 -c AB01MD.f -o AB01MD.o gfortran -O3 -mtune=core2 -c AB01ND.f -o AB01ND.o gfortran -O3 -mtune=core2 -c AB01OD.f -o AB01OD.o . . . (truncated) . gfortran -O3 -mtune=core2 -c delctg.f -o delctg.o gfortran -O3 -mtune=core2 -c select.f -o select.o gcc -shared -s -static-libgcc -o slicot.dll tmp.def AB01MD.o AB01ND.o AB01OD.o AB04MD.o AB05MD.o AB05ND.o AB05OD.o AB05PD.o AB05QD.o AB05RD.o AB05SD.o AB07MD.o AB07ND.o AB08MD.o AB08MZ.o AB08ND.o AB08NX.o AB08NZ.o AB09AD.o AB09AX.o AB09BD.o AB09BX.o AB09CD.o AB09CX.o AB09DD.o AB09ED.o AB09FD.o AB09GD.o AB09HD.o AB09HX.o AB09HY.o AB09ID.o AB09IX.o AB09IY.o AB09JD.o AB09JV.o AB09JW.o AB09JX.o AB09KD.o AB09KX.o AB09MD.o AB09ND.o AB13AD.o AB13AX.o AB13BD.o AB13CD.o AB13DD.o AB13DX.o AB13ED.o AB13FD.o AB13ID.o AB13MD.o AB8NXZ.o AG07BD.o AG08BD.o AG08BY.o AG08BZ.o AG8BYZ.o BB01AD.o BB02AD.o BB03AD.o BB04AD.o BD01AD.o BD02AD.o DE01OD.o DE01PD.o DF01MD.o DG01MD.o DG01ND.o DG01NY.o DG01OD.o DK01MD.o FB01QD.o FB01RD.o FB01SD.o FB01TD.o FB01VD.o FD01AD.o IB01AD.o IB01BD.o IB01CD.o IB01MD.o IB01MY.o IB01ND.o IB01OD.o IB01OY.o IB01PD.o IB01PX.o IB01PY.o IB01QD.o IB01RD.o IB03AD.o IB03BD.o MA01AD.o MA01BD.o MA01BZ.o MA01CD.o MA02AD.o MA02BD.o MA02BZ.o MA02CD.o MA02CZ.o MA02DD.o MA02ED.o MA02ES.o MA02EZ.o MA02FD.o MA02GD.o MA02GZ.o MA02HD.o MA02ID.o MA02IZ.o MA02JD.o MA02JZ.o MB01KD.o MB01LD.o MB01MD.o MB01ND.o MB01PD.o MB01QD.o MB01RD.o MB01RU.o MB01RW.o MB01RX.o MB01RY.o MB01SD.o MB01TD.o MB01UD.o MB01UW.o MB01UX.o MB01VD.o MB01WD.o MB01XD.o MB01XY.o MB01YD.o MB01ZD.o MB02CD.o MB02CU.o MB02CV.o MB02CX.o MB02CY.o MB02DD.o MB02ED.o MB02FD.o MB02GD.o MB02HD.o MB02ID.o MB02JD.o MB02JX.o MB02KD.o MB02MD.o MB02ND.o MB02NY.o MB02OD.o MB02PD.o MB02QD.o MB02QY.o MB02RD.o MB02RZ.o MB02SD.o MB02SZ.o MB02TD.o MB02TZ.o MB02UD.o MB02UU.o MB02UV.o MB02UW.o MB02VD.o MB02WD.o MB02XD.o MB02YD.o MB03AD.o MB03BA.o MB03BB.o MB03BC.o MB03BD.o MB03BE.o MB03BZ.o MB03CD.o MB03CZ.o MB03DD.o MB03DZ.o MB03ED.o MB03FD.o MB03FZ.o MB03GD.o MB03GZ.o MB03HD.o MB03HZ.o MB03ID.o MB03IZ.o MB03JD.o MB03JZ.o MB03KA.o MB03KB.o MB03KC.o MB03KD.o MB03KE.o MB03LD.o MB03LF.o MB03LZ.o MB03MD.o MB03MY.o MB03ND.o MB03NY.o MB03OD.o MB03OY.o MB03PD.o MB03PY.o MB03QD.o MB03QX.o MB03QY.o MB03RD.o MB03RX.o MB03RY.o MB03SD.o MB03TD.o MB03TS.o MB03UD.o MB03VD.o MB03VY.o MB03WA.o MB03WD.o MB03WX.o MB03XD.o MB03XP.o MB03XS.o MB03XU.o MB03XZ.o MB03YA.o MB03YD.o MB03YT.o MB03ZA.o MB03ZD.o MB04AD.o MB04AZ.o MB04BD.o MB04BZ.o MB04CD.o MB04DD.o MB04DI.o MB04DS.o MB04DY.o MB04DZ.o MB04ED.o MB04FD.o MB04GD.o MB04HD.o MB04ID.o MB04IY.o MB04IZ.o MB04JD.o MB04KD.o MB04LD.o MB04MD.o MB04ND.o MB04NY.o MB04OD.o MB04OW.o MB04OX.o MB04OY.o MB04PA.o MB04PB.o MB04PU.o MB04PY.o MB04QB.o MB04QC.o MB04QF.o MB04QS.o MB04QU.o MB04RB.o MB04RU.o MB04SU.o MB04TB.o MB04TS.o MB04TT.o MB04TU.o MB04TV.o MB04TW.o MB04TX.o MB04TY.o MB04UD.o MB04VD.o MB04VX.o MB04WD.o MB04WP.o MB04WR.o MB04WU.o MB04XD.o MB04XY.o MB04YD.o MB04YW.o MB04ZD.o MB05MD.o MB05MY.o MB05ND.o MB05OD.o MB05OY.o MB3OYZ.o MB3PYZ.o MC01MD.o MC01ND.o MC01OD.o MC01PD.o MC01PY.o MC01QD.o MC01RD.o MC01SD.o MC01SW.o MC01SX.o MC01SY.o MC01TD.o MC01VD.o MC01WD.o MC03MD.o MC03ND.o MC03NX.o MC03NY.o MD03AD.o MD03BA.o MD03BB.o MD03BD.o MD03BF.o MD03BX.o MD03BY.o NF01AD.o NF01AY.o NF01BA.o NF01BB.o NF01BD.o NF01BE.o NF01BF.o NF01BP.o NF01BQ.o NF01BR.o NF01BS.o NF01BU.o NF01BV.o NF01BW.o NF01BX.o NF01BY.o SB01BD.o SB01BX.o SB01BY.o SB01DD.o SB01FY.o SB01MD.o SB02CX.o SB02MD.o SB02MR.o SB02MS.o SB02MT.o SB02MU.o SB02MV.o SB02MW.o SB02ND.o SB02OD.o SB02OU.o SB02OV.o SB02OW.o SB02OX.o SB02OY.o SB02PD.o SB02QD.o SB02RD.o SB02RU.o SB02SD.o SB03MD.o SB03MU.o SB03MV.o SB03MW.o SB03MX.o SB03MY.o SB03OD.o SB03OR.o SB03OT.o SB03OU.o SB03OV.o SB03OY.o SB03PD.o SB03QD.o SB03QX.o SB03QY.o SB03RD.o SB03SD.o SB03SX.o SB03SY.o SB03TD.o SB03UD.o SB04MD.o SB04MR.o SB04MU.o SB04MW.o SB04MY.o SB04ND.o SB04NV.o SB04NW.o SB04NX.o SB04NY.o SB04OD.o SB04OW.o SB04PD.o SB04PX.o SB04PY.o SB04QD.o SB04QR.o SB04QU.o SB04QY.o SB04RD.o SB04RV.o SB04RW.o SB04RX.o SB04RY.o SB06ND.o SB08CD.o SB08DD.o SB08ED.o SB08FD.o SB08GD.o SB08HD.o SB08MD.o SB08MY.o SB08ND.o SB08NY.o SB09MD.o SB10AD.o SB10DD.o SB10ED.o SB10FD.o SB10HD.o SB10ID.o SB10JD.o SB10KD.o SB10LD.o SB10MD.o SB10PD.o SB10QD.o SB10RD.o SB10SD.o SB10TD.o SB10UD.o SB10VD.o S
