Thanks -- yes, I can confirm that it installs OK after erasing and
checking out SVN from scratch.
On 4/30/21 9:40 PM, Henrik Bengtsson wrote:
Ben, it's most like what Peter says. I can confirm it works; I just
installed https://cran.r-project.org/src/base-prerelease/R-latest.tar.gz
on an up-to-date CentOS 7.9.2009 system using the vanilla gcc (GCC)
4.8.5 that comes with that version and R compiles just fine and it
passes 'make check' too.
Since R is trying to move toward C++14 support by default, I agree
with Iñaki, you might wanr to build and run R with a newer version of
gcc. gcc 4.8.5 will only give you C++11 support. RedHat's Software
Collections (SCL) devtoolset:s is the easiest way to do this. I've
done this too and can confirm that gcc 7.3.1 that comes with SCL
devtoolset/7 is sufficient to get C++14 support. I'm sharing my
installation with lots of users, so I'm make it all transparent to the
end-user with environment modules, i.e. 'module load r/4.1.0' is all
the user needs to know.
/Henrik
On Thu, Apr 29, 2021 at 7:28 AM Peter Dalgaard wrote:
You may want to check out your checkout
I see:
Peter-Dalgaards-iMac:R pd$ grep newsock src/main/connections.c
con = R_newsock(host, port, server, serverfd, open, timeout, options);
but your file seems to have lost the ", options" bit somehow. Also, mine is
line 3488, not 3477.
Maybe you have an old file getting in the way?
- Peter
On 29 Apr 2021, at 15:58 , Ben Bolker wrote:
I probably don't want to go down this rabbit hole very far, but if anyone has
any *quick* ideas ...
Attempting to build R from scratch with a fresh SVN checkout on a somewhat
out-of-date CentOS system (for which I don't have root access, although I can
bug people if I care enough).
../r-devel/configure; make
ends with
gcc -std=gnu99 -I../../../r-devel/trunk/src/extra -I. -I../../src/include
-I../../../r-devel/trunk/src/include -I/usr/local/include
-I../../../r-devel/trunk/src/nmath -DHAVE_CONFIG_H -fopenmp -g -O2 -c
../../../r-devel/trunk/src/main/connections.c -o connections.o
../../../r-devel/trunk/src/main/connections.c: In function ‘do_sockconn’:
../../../r-devel/trunk/src/main/connections.c:3477:5: error: too few arguments
to function ‘R_newsock’
con = R_newsock(host, port, server, serverfd, open, timeout);
^
In file included from ../../../r-devel/trunk/src/main/connections.c:80:0:
../../../r-devel/trunk/src/include/Rconnections.h:83:13: note: declared here
Rconnection R_newsock(const char *host, int port, int server, int serverfd,
const char * const mode, int timeout, int options);
^
make[3]: *** [connections.o] Error 1
Any suggestions for a quick fix/diagnosis?
cheers
Ben Bolker
$ gcc --version
gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
$ lsb_release -a
LSB Version:
:core-4.1-amd64:core-4.1-noarch:cxx-4.1-amd64:cxx-4.1-noarch:desktop-4.1-amd64:desktop-4.1-noarch:languages-4.1-amd64:languages-4.1-noarch:printing-4.1-amd64:printing-4.1-noarch
Distributor ID: CentOS
Description: CentOS Linux release 7.8.2003 (Core)
Release: 7.8.2003
Codename: Core
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Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd@cbs.dk Priv: pda...@gmail.com
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