Re: [Rd] ubuntu software updater clash with with cloud.r-project
On 2018-09-03 16:29, David Shera wrote: This seems the most appropriate place to report this. Not to me: You should try r-sig-debian. Göran I just updated my ubuntu to 18.04. And installed R by adding the line to /etc/apt/source.list: deb ... cloud.r-project ... bionic-cran35/ R installed just fine. However, my ubuntu software update would not finish correctly any more. Failed to access ... check internet connection (internet connection was just fine.) Commented out the line in sources.list and software update runs just fine now. So if I want to use apt to get packages, I'll have to uncomment the line, get the packages, and then comment it out again? Seems like a bug, but not part of any R package. Thanks. -David [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] How do I prevent macOS from attempting to build my package?
[ Initially posted in r-package-devel, now reposting here by request from
Uwe; my apologies for the cross-post. ]
Package status reports come in three different severities: NOTE, WARNING, and
ERROR. Motivated by Brodie's nice (dependency-free) accessor function for
per-maintainer status [1], I have looked into reducing the number of ERRORs.
I hit a road block. Several of my packages depend on external libraries that
must be present. I test for these in configure, but their absence is still an
ERROR. This makes the situation on macOS a little delicate. Simon, who is
doing, and always done, a metric ton of work around R and OS X / maxOS is the
only one who could change this but I cannot realistically ask him to keep a
number of (in some cases more difficult or esoteric) libraries afloat. And
some of these have now been missing on his platform for several years.
And in one case (RcppAPT, requiring libapt-dev) the build is even
imppossible. Now, the Fedora maintainer knows this and has the build
blacklisted.
Hence:
R> source("checkCRAN.R")
Package ERROR WARN NOTE OK
[...]
23 RcppAPT 24
[...]
No failures from Fedora. But two from macOS which I can never ever get rid
off (unless I do silly code acrobatics by #ifdef'ing all real code away).
So here is my question: Can we we please refine
OS_type: unix
a little more, and/or maybe allow other blacklists in the package upload?
Thoughts or comments most welcome.
Thanks, Dirk
[1]
https://gist.github.com/brodieG/e60c94d4036f45018530ea504258bcf3#file-cran-check-r
--
http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
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Re: [Rd] Argument 'dim' misspelled in error message
Thanks! On 09/01/2018 05:42 AM, Kurt Hornik wrote: Hervé Pagès writes: Thanks: fixed in the trunk with c75223. Best -k Hi, The following error message misspells the name of the 'dim' argument: array(integer(0), dim=integer(0)) Error in array(integer(0), dim = integer(0)) : 'dims' cannot be of length 0 The name of the argument is 'dim' not 'dims': args(array) function (data = NA, dim = length(data), dimnames = NULL) NULL Cheers, H. -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax:(206) 667-1319 __ R-devel@r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Ddevel&d=DwIFAw&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=SzMRc3M_TJEtaAqp-2nqiquGAjCH605Ocf2-jkPG_1E&s=1PeobGV2Ld7gOtIS5coLotgg3VLknDQyCXVjO08DbX4&e= -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax:(206) 667-1319 __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] [FORGED] Re: plotmath degree symbol
Hi Thanks for that, but I still cannot confirm on ... sudo docker run -v $(pwd):/home/work/ -w /home/work --rm -ti rocker/r-ver:3.5.1 Could you please read the comments within the "Cairo Fonts" section of the ?X11 help page, in case that offers some explanation. Paul On 29/08/18 02:15, Martin Møller Skarbiniks Pedersen wrote: On Fri, 24 Aug 2018 at 19:53, Edzer Pebesma wrote: In plotmath expressions, R's degree symbol, e.g. shown by plot(1, main = parse(text = "1*degree*C")) has sunk to halfway the text line, instead of touching its top. In older R versions this looked much better. I can confirm this problem. R version 3.5.1 (2018-07-02) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.1 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1 locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_3.5.1 __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel -- Dr Paul Murrell Department of Statistics The University of Auckland Private Bag 92019 Auckland New Zealand 64 9 3737599 x85392 p...@stat.auckland.ac.nz http://www.stat.auckland.ac.nz/~paul/ __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
