[Rd] Error in texi2dvi

2016-06-17 Thread Spencer Graves

Hello:


  Changes in R seem to have broken the sos vignette, and I don't 
know how to fix it.  The build on R-forge, 
"https://r-forge.r-project.org/R/?group_id=235&log=build_src&pkg=sos&flavor=patched";, 
ends as follows:



Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  :
  Running 'texi2dvi' on 'sos.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.1 \Sconcordance
 {concordance:sos.tex:sos.Rnw:%
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
Calls:  -> texi2pdf -> texi2dvi
Execution halted


  I stepped through the vignette line by line without seeing an 
error message.  However, when I do "R CMD build sos" on my own computer, 
it stops with a similar error message:



Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  :
  Running 'texi2dvi' on 'sos.tex' failed.
BibTeX errors:
The top-level auxiliary file: sos.aux
The style file: abbrvnat.bst
I found no \bibdata command---while reading file sos.aux
Calls:  -> texi2pdf -> texi2dvi


  When I clicked, "Compile PDF" in RStudio, I first got a pop-up 
saying, 'Sweave Noweb syntax? It seems you are using the Sweave-specific 
syntax in line(s) 9, 15, 145, 172, 186, 189, 208, 211, 218, 225, 231, 
243, 246, 283, 365, 390; you may need Sweave2knitr("sos.Rnw") to convert 
it to knitr'.  When I click, "OK", it stops on LIne 146, "Error in 
eval(expr, envir, enclos) : object 'hide' not found".  Line 145 reads, 
"<>=".



  What can I do to get this vignette to working again with the 
least amount of work?



  Thanks,
  Spencer Graves

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[Rd] vignette output: word_document problems

2016-06-17 Thread Spencer Graves

Hello:


   Clicking "Knit Word" in RStudio 0.99.893 with R 3.3.0, works 
fine with a vignette with "output: word_document".  However, "R CMD 
build" throws the following error:



$ R CMD build pkgW2vignettes
* checking for file ‘pkgW2vignettes/DESCRIPTION’ ... OK
* preparing ‘pkgW2vignettes’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Error: processing vignette 'vignette2word_document.Rmd' failed with 
diagnostics:
Failed to locate the ‘weave’ output file (by engine ‘knitr::rmarkdown’) 
for vignette with name ‘vignette2word_document’. The following files 
exist in directory ‘.’: ‘vignette1createsObject1.R’, 
‘vignette1createsObject1.Rmd’, ‘vignette1createsObject1.html’, 
‘vignette2confusedByObject1.R’, ‘vignette2confusedByObject1.Rmd’, 
‘vignette2confusedByObject1.html’, ‘vignette2word_document.Rmd’, 
‘vignette2word_document.docx’

Execution halted


   A toy example showing this problem is in rev. 239 of 
"vignette2word_document.Rmd" in "pkgW2vignettes" on R-Forge 
(https://r-forge.r-project.org/R/?group_id=235).



   Is there a way to get "R CMD build" to work with a vignette with 
output: word_document?



   Thanks,
   Spencer Graves


pkgW2vignettes


I can knit
with a vignette using RStudio 0.99.893 with R 3.3.0, I can knit




 > sessionInfo()
R version 3.3.0 (2016-05-03)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.11.5 (El Capitan)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats graphics  grDevices utils datasets
[6] methods   base

other attached packages:
[1] WriteXLS_4.0.0 sos_1.3-8  brew_1.0-6

loaded via a namespace (and not attached):
[1] htmltools_0.3.5 tools_3.3.0 yaml_2.1.13
[4] Rcpp_0.12.5 rmarkdown_0.9.6 knitr_1.13
[7] digest_0.6.9
 >

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