[Rd] trivial typo in ?AIC
"if more than one object are provided, " could be "if more than one object is provided" or "if multiple objects are provided" cheers Ben Bolker > sessionInfo() R version 2.5.1 (2007-06-27) i486-pc-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C attached base packages: [1] "stats" "graphics" "grDevices" "utils" "datasets" "methods" [7] "base" __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] trivial typo in ?AIC
On 9/11/2007 7:58 AM, Ben Bolker wrote: > "if more than one object are provided, " > > could be > > "if more than one object is provided" > > or > > "if multiple objects are provided" Fixed, thanks. Duncan Murdoch > > cheers > Ben Bolker > > > sessionInfo() > R version 2.5.1 (2007-06-27) > i486-pc-linux-gnu > > locale: > LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C > > attached base packages: > [1] "stats" "graphics" "grDevices" "utils" "datasets" "methods" > [7] "base" > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] typo in ?kernel
in the example section (line -2 from the bottom) Brockwell and Davies should be Brockwell and Davis Regards, Simone __ Simone Giannerini Dipartimento di Scienze Statistiche "Paolo Fortunati" Universita' di Bologna Via delle belle arti 41 - 40126 Bologna, ITALY Tel: +39 051 2098262 Fax: +39 051 232153 __ [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] typo in ?kernel
On 9/11/2007 8:35 AM, Simone Giannerini wrote: > in the example section (line -2 from the bottom) > > Brockwell and Davies > > should be > > Brockwell and Davis Fixed, thanks. (It also shows up in the Details section.) Duncan Murdoch __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] partial correlation function for multivariate time series
I think the reference for pacf is
@BOOK{GraNew77,
author ={Granger, C. W. J. and Newbold, Paul},
title = {Forecasting Economic Time Series},
publisher = {Academic Press},
year = 1977
}
It certainly would not be Reisel's book, as parts of the code predate
that by many years.
Paul Gilbert
Simone Giannerini wrote:
> Dear all,
>
> I found the following behaviour with pacf() in the multivariate case,
>
> set.seed(10)
> x <- rnorm(1000,sd=1)
> y <- rnorm(1000,sd=1)
> pacf(ts(cbind(x,y)),plot=FALSE,lag.max=10)
>
> Partial autocorrelations of series 'cbind(x, y)', by lag
>
> , , x
>
> x y
> 0.047 ( 1)0.000 ( -1)
> 0.011 ( 2)0.000 ( -2)
> 0.005 ( 3)0.000 ( -3)
> 0.013 ( 4)0.000 ( -4)
> 0.050 ( 5)0.000 ( -5)
> 0.034 ( 6)0.000 ( -6)
> 0.026 ( 7)0.000 ( -7)
>-0.029 ( 8)0.000 ( -8)
>-0.010 ( 9)0.000 ( -9)
>-0.013 ( 10)0.000 (-10)
>
> , , y
>
> x y
> 374.052 ( 1) -0.045 ( 1)
>66.717 ( 2) -0.024 ( 2)
> -535.810 ( 3) -0.031 ( 3)
> 120.802 ( 4) -0.020 ( 4)
> 142.824 ( 5)0.004 ( 5)
> -211.711 ( 6) -0.010 ( 6)
> 201.856 ( 7)0.058 ( 7)
> 286.079 ( 8) -0.035 ( 8)
> -134.057 ( 9)0.032 ( 9)
> -18.200 ( 10)0.019 ( 10)
>
> Since there are multiple ways of defining the pacf for multivariate time
> series
> (see e.g. G.C. Reinsel, Elements of multivariate time series analysis, II
> edition, Springer, section 3.3) and given that
> in ?pacf there is no reference to articles or books regarding its
> computation
> I do not know whether this behaviour is expected or it is a bug instead.
> In the first case could you provide a reference for it? In the second case I
> might file a bug report.
> Thank you for the great work you are doing for the scientific community.
>
> kind regards,
>
> Simone Giannerini
>
> WINDOWS
>
> platform i386-pc-mingw32
> arch i386
> os mingw32
> system i386, mingw32
> status
> major 2
> minor 5.1
> year 2007
> month 06
> day27
> svn rev42083
> language R
> version.string R version 2.5.1 (2007-06-27)
>
> LINUX
>
>
>>R.Version()
>
> $platform
> [1] "x86_64-unknown-linux-gnu"
>
> $arch
> [1] "x86_64"
>
> $os
> [1] "linux-gnu"
>
> $system
> [1] "x86_64, linux-gnu"
>
> $status
> [1] ""
>
> $major
> [1] "2"
>
> $minor
> [1] "5.1"
>
> $year
> [1] "2007"
>
> $month
> [1] "06"
>
> $day
> [1] "27"
>
> $`svn rev`
> [1] "42083"
>
> $language
> [1] "R"
>
> $version.string
> [1] "R version 2.5.1 (2007-06-27)"
La version française suit le texte anglais.
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[Rd] gcc-sjlj
Everyone,
I'm running R CMD check on a package using the 2.6.0 alpha version:
> sessionInfo()
R version 2.6.0 alpha (2007-09-09 r42809)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
The check is failing with this error:
* checking whether package 'caret' can be installed ... ERROR
Installation failed.
Specifically:
making DLL ...
making caret.d from caret.c
make[3]: gcc-sjlj: Command not found
make[3]: [caret.d] Error 127 (ignored)
cat: caret.d: No such file or directory
make[3]: [makeMakedeps] Error 1 (ignored)
gcc-sjlj -std=gnu99 -Ic:/PROGRA~1/R/R260AL~1/include-Wall -O3 -c
caret.c -o caret.o
make[3]: gcc-sjlj: Command not found
make[3]: *** [caret.o] Error 127
make[2]: *** [srcDynlib] Error 2
make[1]: *** [all] Error 2
make: *** [pkg-caret] Error 2
Is there a new gcc version that I need to get or was a space omitted in
the gcc command? (This uses gcc version 3.4.5 (mingw special)). I
checked the release notes and the "Building R for Windows" site and I
didn't see any mention of version changes. I've been able to run RCMD
check with previous versions on the same package without error.
Thanks,
Max
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Re: [Rd] gcc-sjlj
gcc-4.2.1 is the default now.
Uwe Ligges
Kuhn, Max wrote:
> Everyone,
>
> I'm running R CMD check on a package using the 2.6.0 alpha version:
>
>> sessionInfo()
> R version 2.6.0 alpha (2007-09-09 r42809)
> i386-pc-mingw32
>
> locale:
> LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
> States.1252;LC_MONETARY=English_United
> States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> The check is failing with this error:
>
> * checking whether package 'caret' can be installed ... ERROR
> Installation failed.
>
> Specifically:
>
> making DLL ...
> making caret.d from caret.c
> make[3]: gcc-sjlj: Command not found
> make[3]: [caret.d] Error 127 (ignored)
> cat: caret.d: No such file or directory
> make[3]: [makeMakedeps] Error 1 (ignored)
> gcc-sjlj -std=gnu99 -Ic:/PROGRA~1/R/R260AL~1/include-Wall -O3 -c
> caret.c -o caret.o
> make[3]: gcc-sjlj: Command not found
> make[3]: *** [caret.o] Error 127
> make[2]: *** [srcDynlib] Error 2
> make[1]: *** [all] Error 2
> make: *** [pkg-caret] Error 2
>
> Is there a new gcc version that I need to get or was a space omitted in
> the gcc command? (This uses gcc version 3.4.5 (mingw special)). I
> checked the release notes and the "Building R for Windows" site and I
> didn't see any mention of version changes. I've been able to run RCMD
> check with previous versions on the same package without error.
>
> Thanks,
>
> Max
>
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Re: [Rd] gcc-sjlj
On 11/09/2007 1:24 PM, Kuhn, Max wrote: > Everyone, > > I'm running R CMD check on a package using the 2.6.0 alpha version: > >> sessionInfo() > R version 2.6.0 alpha (2007-09-09 r42809) > i386-pc-mingw32 > > locale: > LC_COLLATE=English_United States.1252;LC_CTYPE=English_United > States.1252;LC_MONETARY=English_United > States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > The check is failing with this error: > > * checking whether package 'caret' can be installed ... ERROR > Installation failed. > > Specifically: > > making DLL ... > making caret.d from caret.c > make[3]: gcc-sjlj: Command not found > make[3]: [caret.d] Error 127 (ignored) > cat: caret.d: No such file or directory > make[3]: [makeMakedeps] Error 1 (ignored) > gcc-sjlj -std=gnu99 -Ic:/PROGRA~1/R/R260AL~1/include-Wall -O3 -c > caret.c -o caret.o > make[3]: gcc-sjlj: Command not found > make[3]: *** [caret.o] Error 127 > make[2]: *** [srcDynlib] Error 2 > make[1]: *** [all] Error 2 > make: *** [pkg-caret] Error 2 > > Is there a new gcc version that I need to get or was a space omitted in > the gcc command? (This uses gcc version 3.4.5 (mingw special)). I > checked the release notes and the "Building R for Windows" site and I > didn't see any mention of version changes. I've been able to run RCMD > check with previous versions on the same package without error. gcc 4 is the new default, specifically the MinGW "setjmp/longjmp" build, gcc-sjlj. If you want to use the old 3.4.5, you need to edit MkRules, setting BUILD=GCC3. For now, the Windows toolset I put together (www.murdoch-sutherland.com/Rtools) includes both versions, so you might want to download a new copy rather than continuing to use the old one; sometime after the release of 2.6.0 I'll drop 3.4.5 from the tools. Duncan Murdoch __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] gcc-sjlj
Duncan,
> gcc 4 is the new default, specifically the MinGW "setjmp/longjmp"
build,
> gcc-sjlj. If you want to use the old 3.4.5, you need to edit MkRules,
> setting BUILD=GCC3.
Thanks for the suggestion. With my C skills, that would be like giving a
monkey a gun. Nothing good could come of it.
> For now, the Windows toolset I put together
> (www.murdoch-sutherland.com/Rtools) includes both versions, so you
might
> want to download a new copy rather than continuing to use the old one;
> sometime after the release of 2.6.0 I'll drop 3.4.5 from the tools.
Sorry, I originally looked there and missed the link. I used it and
everything worked fine. It is a great improvement compared to hunting
down the various files. I'm up and running now with no issues.
Max
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[Rd] "could not find function" in R CMD check
During R CMD check I get this:
** building package indices ...
Error in eval(expr, envir, enclos) : could not find function
"readingError"
Execution halted
ERROR: installing package indices failed
The check aborts there. readingError is a function I just added; for
reference
setClass("readingError", contains="matrix")
readingError <- function(...) new("readingError", matrix(...))
which is in readingError.R in the project's R subdirectory.
Some code in the data directory invokes readingError, and the .Rd file
includes \alias{readingError}, \alias{readingError-class},
\name{readingError-class} and an example invoking readingError.
I'm using R 2.5.1 as packaged for Debian GNU/Linux.
Does anyone have an idea what's going wrong here, or how to fix or debug
it?
The code seems to work OK when I use it from ESS.
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185 Berry St #5700 [EMAIL PROTECTED]
Dept of Epidemiology and Biostatistics fax: (415) 514-8150
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San Francisco, CA 94107-1739 hm: (415) 550-1062
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