Bug#891971: ITP: bali-phy -- Bayesian Inference of Alignment and Phylogeny
Package: wnpp Severity: wishlist Owner: Benjamin Redelings * Package name: bali-phy Version : 3.0 Upstream Author : Benjamin Redelings * URL : http://www.bali-phy.org/ * License : (GPL) Programming Lang: (C++) Description : Bayesian Inference of Alignment and Phylogeny BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot. . BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene. - Why is this package relevant? This package performs Bayesian inference of alignment, as well as inference of phylogeny like mrbayes, beast-mcmc, beast2-mcmc, etc. This package produces higher quality alignments than programs like fsa, mafft, muscle, at the cost of taking much longer to run. - How do you plan to maintain it? I hope to maintain it myself. I am looking for a mentor.
[Q] Standard way to force libc5-compat?
Hi, I successfully upgraded to hamm from a very recent CD. I've got netscape, Realplayer, mxaudio, & lots of other non-debian stuff working (2.0.33-pre-1 :), so the distribution seems to be working pretty well. However, there ARE some bugs, of course. I'll report them here later...is this the right list? Is there an FAQ for people upgrading to the unstable version? I'd love to read it :) What I need to know right know is whether or not there is a "standard" way to run binaries (such as netscape) that have been builts with libc5. I have very simple script called '5run' that tries to do this right now, but I still need to fix it so that it complains when it can't find the libc5 version of a library, instead of just using the libc6 version (and crashing!). Can somebody please point me in the right direction? I don't want to go ahead and write a big system, only to delete it immediately when I find out its not the "right" way! Thanks, -BenRI -- TO UNSUBSCRIBE FROM THIS MAILING LIST: e-mail the word "unsubscribe" to [EMAIL PROTECTED] . Trouble? e-mail to [EMAIL PROTECTED] .
