Bug#961784: ITP: hera -- Library for computing bottleneck and Wasserstein distances between persistence diagrams

2020-05-29 Thread Gard Spreemann
Package: wnpp
Severity: wishlist
Owner: Gard Spreemann 

* Package name: hera
  Version : 0~git20200309
  Upstream Author : Arnur Nigmetov
* URL : https://github.com/grey-narn/hera
* License : BSD-3-clause
  Programming Lang: C++
  Description : Library for computing bottleneck and Wasserstein distances 
between persistence diagrams

Hera is a header-only library that implements algorithms from

Michael Kerber, Dmitriy Morozov, and Arnur Nigmetov,
"Geometry Helps to Compare Persistence Diagrams.", 
Journal of Experimental Algorithmics, vol. 22, 2017, pp. 1--20.
(conference version: ALENEX 2016).

that exploits geometry to compute Wasserstein and bottleneck distances
between persistence diagrams much faster than plain matching-based
algorithms.

The library is being packaged because it is now an upstream dependency
of GUDHI (src:gudhi).

I intend to maintain the package myself.



Is the debian-mirrors team MIA?

2020-05-29 Thread John Paul Adrian Glaubitz
(Please keep me CC'd, I'm not on the list)

Hi!

I have been trying to get a small pull request on the masterlist [1] merged
for Debian Ports but I have not heard any feedback for over a month.

I also tried pinging on #debian-mirrors on IRC but didn't get any feedback
either.

Does anyone know whom to reach out to?

Thanks,
Adrian

-- 
 .''`.  John Paul Adrian Glaubitz
: :' :  Debian Developer - glaub...@debian.org
`. `'   Freie Universitaet Berlin - glaub...@physik.fu-berlin.de
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Re: Is the debian-mirrors team MIA?

2020-05-29 Thread John Paul Adrian Glaubitz
On 5/29/20 9:40 AM, John Paul Adrian Glaubitz wrote:
> (Please keep me CC'd, I'm not on the list)
> I have been trying to get a small pull request on the masterlist [1] merged
> for Debian Ports but I have not heard any feedback for over a month.

Forgot the link, sorry:

> https://salsa.debian.org/mirror-team/masterlist/-/merge_requests/6

-- 
 .''`.  John Paul Adrian Glaubitz
: :' :  Debian Developer - glaub...@debian.org
`. `'   Freie Universitaet Berlin - glaub...@physik.fu-berlin.de
  `-GPG: 62FF 8A75 84E0 2956 9546  0006 7426 3B37 F5B5 F913



Re: Is the debian-mirrors team MIA?

2020-05-29 Thread Holger Levsen
On Fri, May 29, 2020 at 09:41:33AM +0200, John Paul Adrian Glaubitz wrote:
> On 5/29/20 9:40 AM, John Paul Adrian Glaubitz wrote:
> > (Please keep me CC'd, I'm not on the list)

I find it somewhat amusing, to ask for courtesty copies and then not
having the courtesty to cc: the people one is complaining about.

So I've added mirr...@debian.org to cc: so they are notified about
this thread on -devel@ at least.

> > I have been trying to get a small pull request on the masterlist [1] merged
> > for Debian Ports but I have not heard any feedback for over a month.
> 
> Forgot the link, sorry:
> 
> > https://salsa.debian.org/mirror-team/masterlist/-/merge_requests/6

you also could have pinged the MR once again, before escalating to debian-devel@
immediatly. Sometimes stuff fells of the radar. Just saying...


-- 
cheers,
Holger

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Re: Is the debian-mirrors team MIA?

2020-05-29 Thread John Paul Adrian Glaubitz
On 5/29/20 10:37 AM, Holger Levsen wrote:
> On Fri, May 29, 2020 at 09:41:33AM +0200, John Paul Adrian Glaubitz wrote:
>> On 5/29/20 9:40 AM, John Paul Adrian Glaubitz wrote:
>>> (Please keep me CC'd, I'm not on the list)
> 
> I find it somewhat amusing, to ask for courtesty copies and then not
> having the courtesty to cc: the people one is complaining about.
> 
> So I've added mirr...@debian.org to cc: so they are notified about
> this thread on -devel@ at least.

I have asked on debian-mirrors@d.o, I wasn't aware of mirr...@debian.org,
thanks for the heads-up.

>>> I have been trying to get a small pull request on the masterlist [1] merged
>>> for Debian Ports but I have not heard any feedback for over a month.
>>
>> Forgot the link, sorry:
>>
>>> https://salsa.debian.org/mirror-team/masterlist/-/merge_requests/6
> 
> you also could have pinged the MR once again, before escalating to 
> debian-devel@
> immediatly. Sometimes stuff fells of the radar. Just saying...

This wasn't about escalating, this was just asking if anyone can provide
input. If I don't hear back for about a month on three different communication
channels, I'm assuming I might be asking at the wrong location.

Adrian

-- 
 .''`.  John Paul Adrian Glaubitz
: :' :  Debian Developer - glaub...@debian.org
`. `'   Freie Universitaet Berlin - glaub...@physik.fu-berlin.de
  `-GPG: 62FF 8A75 84E0 2956 9546  0006 7426 3B37 F5B5 F913



Re: Upload of package (Closes: #952788) in bug reports

2020-05-29 Thread Tomas Pospisek
On 28.05.20 18:44, Leandro Cunha wrote:
> Close https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=952788 
> With several changes in the package.
> 
> Em qui., 28 de mai. de 2020 às 12:52, Leandro Cunha
> mailto:leandrocunha...@gmail.com>> escreveu:
> 
> Can I help with uploading a package? I'm starting now with packaging
> and everything went well. It just needs a review and have a maintainer.

I think your best option is to coordinate directly with the package
maintainer, Andrej Shadura . Write to him. He's
active but maybe busy so you might want to be patient in communications
with him.
*t



Re: Upload of package (Closes: #952788) in bug reports

2020-05-29 Thread Leandro Cunha
Hi,

Busy people usually take a long time to respond, but if don't have the
initiative it doesn't help. I also sent also it to the Debian Mentors
mailing list and he replied. Understanding that this is not the appropriate
list for the problem in question. But I also wanted to talk about open
bugs.
In the description of the mailing list it mentions.

Development of Debian
Discussion about technical development topics. (High-volume mailing list.)
This list is not moderated; posting is allowed by anyone.

Thanks for listening.

Em sex., 29 de mai. de 2020 às 06:06, Tomas Pospisek 
escreveu:

> On 28.05.20 18:44, Leandro Cunha wrote:
> > Close https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=952788
> > With several changes in the package.
> >
> > Em qui., 28 de mai. de 2020 às 12:52, Leandro Cunha
> > mailto:leandrocunha...@gmail.com>> escreveu:
> >
> > Can I help with uploading a package? I'm starting now with packaging
> > and everything went well. It just needs a review and have a
> maintainer.
>
> I think your best option is to coordinate directly with the package
> maintainer, Andrej Shadura . Write to him. He's
> active but maybe busy so you might want to be patient in communications
> with him.
> *t
>
>


Re: Is the debian-mirrors team MIA?

2020-05-29 Thread Holger Levsen
On Fri, May 29, 2020 at 10:52:02AM +0200, John Paul Adrian Glaubitz wrote:
> > So I've added mirr...@debian.org to cc: so they are notified about
> > this thread on -devel@ at least.
> I have asked on debian-mirrors@d.o, I wasn't aware of mirr...@debian.org,
> thanks for the heads-up.

www.debian.org -> sitemap -> organisational structure -> search for mirrors.
 
> > you also could have pinged the MR once again, before escalating to 
> > debian-devel@
> > immediatly. Sometimes stuff fells of the radar. Just saying...
> This wasn't about escalating, this was just asking if anyone can provide
> input.

while at the same time escalating. You might not have ment to, but you did
(especially as you didnt ping the MR in question once. You straight went
to -devel).
 

-- 
cheers,
Holger

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Videoconference today Friday 2020-05-29 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020)))

2020-05-29 Thread Andreas Tille
Hi,
   
for those who would like to join our next videomeeting it will happen at
   
 
https://www.timeanddate.com/worldclock/fixedtime.html?msg=Debian+CoViD-19+Biohackathon+Video+Conference&iso=20200529T20&p1=37&ah=1
   
in the Jitsi channel
   
 https://meet.jit.si/DebianMedCovid19
 
These weekly video meetings were started in the Debian Med
Biohackathon[1].  The topic is what contributors have done in the past
week and to coordinate the work for next week.  Despite the one week
of hackathon is over Covid-19 is not and there is a lot of remaining
work to do.  Newcomers are always welcome.

BTW, we are discussing another dedicated COVID-19 sprint week.
   
See you
   
   Andreas.

[1] https://lists.debian.org/debian-devel-announce/2020/03/msg00010.html

-- 
http://fam-tille.de



Re: DNF for Debian

2020-05-29 Thread Mihai Moldovan
Sorry for the late response. I've been busy, and, honestly, also always forgot
to actually answer.


* On 5/3/20 2:03 PM, Holger Levsen wrote:
> hm, I'd be willing to sponsor and mentor those uploads, but I cannot commit
> to maintaining them as well. Is there anybody out there who would?

unman seems to be interested, if that's good enough, so there's that.


> all very very nice! It would be a pity to have this rot, but then, without
> maintenance it will anyway eventually...

Personally, I will have to "maintain" the package sets anyway, because I'm
building a lot of Fedora/CentOS packages in an automatic fashion on Debian.

This "maintenance" just means that I'll probably update stuff every half a year
or year, though, essentially "whenever it breaks" (which does tend to happen).

There's inevitably some bitrot involved, but I just don't have the time for
proper maintenance.


* On 5/25/20, 6:06 PM, unman wrote:
> That package is incredibly useful to us in Qubes, as you'll see.
> Where would I be able to pick up your package, and do any necessary work
> on them before uploading?

It's great if you have both a use case for it and are willingly to take over!

As given in the initial description, I've published source and binary packages
for Debian Unstable/Sid at https://packages.x2go.org/debian-test/pool/main/

Note that the binaries are a bit old by now and would probably like a rebuild,
but the source is still the one I'm also using on my package builder.

Also, the packages became a bit stale version wise (after all, they are 9 month
old by now) and some included patches have already been applied upstream. I
haven't tried updating (and testing any updates) yet, though, and probably won't
come to that shortly either.

Anyway, this said, it should still be a pretty solid base to build on.



Mihai



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Re: DNF for Debian

2020-05-29 Thread Holger Levsen
hi Mihai,

On Fri, May 29, 2020 at 12:17:13PM +0200, Mihai Moldovan wrote:
> Sorry for the late response. I've been busy, and, honestly, also always forgot
> to actually answer.

thanks for your reply & don't worry, this happens often & to many people, me
included.
 
> unman seems to be interested, if that's good enough, so there's that.

that is good enough if not much better than that.
 
> > all very very nice! It would be a pity to have this rot, but then, without
> > maintenance it will anyway eventually...
> 
> Personally, I will have to "maintain" the package sets anyway, because I'm
> building a lot of Fedora/CentOS packages in an automatic fashion on Debian.
> 
> This "maintenance" just means that I'll probably update stuff every half a 
> year
> or year, though, essentially "whenever it breaks" (which does tend to happen).
[...]
> As given in the initial description, I've published source and binary packages
> for Debian Unstable/Sid at https://packages.x2go.org/debian-test/pool/main/
> 
> Note that the binaries are a bit old by now and would probably like a rebuild,
> but the source is still the one I'm also using on my package builder.
> 
> Also, the packages became a bit stale version wise (after all, they are 9 
> month
> old by now) and some included patches have already been applied upstream. I
> haven't tried updating (and testing any updates) yet, though, and probably 
> won't
> come to that shortly either.
 
the important part is whether we'll get these packages ready and up to date
until end of 2020 *and* whether we can commit to maintain important fixes after 
that.

end of 2020 because of "key release dates" on https://release.debian.org/

it's ok(ish) if the stuff is outdated today, but in 6 month it really should be 
current.
(and then after the release we can slack a bit again, though usually it's
less effort to always package and upload the latest version.)


-- 
cheers,
Holger

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   holger@(debian|reproducible-builds|layer-acht).org
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Bug#961795: ITP: eclipse-cdt -- C/C++ Development Tools for Eclipse

2020-05-29 Thread Sudip Mukherjee
Package: wnpp
Severity: wishlist
Owner: Sudip Mukherjee 
Control: block 943552 by -1

* Package name: eclipse-cdt
  Version : 9.11.0
  Upstream Author : many
* URL : https://www.eclipse.org/cdt/
* License : EPL-2.0
  Programming Lang: Java
  Description : C/C++ Development Tools for Eclipse

The CDT Project provides a fully functional C and C++ Integrated
Development Environment based on the Eclipse platform. Features include:
support for project creation and managed build for various toolchains,
standard make build, source navigation, various source knowledge tools,
such as type hierarchy, call graph, include browser, macro definition browser,
code editor with syntax highlighting, folding and hyperlink navigation,
source code refactoring and code generation, visual debugging tools,
including memory, registers, and disassembly viewers.

This is a re-introduction of the package and I will only intend to build
org.eclipse.cdt.core.* and org.eclipse.cdt.utils.* as I will need them
for #943552.

This will be maintained under the umbrella of java-team.

--
Regards
Sudip



Bug#961796: ITP: eclipse-linuxtools -- framework for profiling tools for Eclipse CDT

2020-05-29 Thread Sudip Mukherjee
Package: wnpp
Severity: wishlist
Owner: Sudip Mukherjee 
Control: block 943552 by -1

* Package name: eclipse-linuxtools
  Version : v7.6.0
  Upstream Author : many
* URL : https://www.eclipse.org/linuxtools/
* License : EPL-2.0
  Programming Lang: Java
  Description : framework for profiling tools for Eclipse CDT

The Linux Tools project aims to bring a full-featured C and C++ IDE to
Linux developers. We build on the source editing and debugging features
of the CDT and integrate popular native development tools such as Valgrind,
OProfile, RPM, SystemTap, GCov, GProf, LTTng, etc. Current projects include
LTTng trace viewers and analyzers, an RPM .spec editor, a Valgrind heap
usage analysis tool, and OProfile and Perf call profiling tools.

This is a re-introduction of the package and for now I only intend to
build org.eclipse.linuxtools.dataviewers.piechart.PieChart which I will
need for #943552.

This will be maintained under the umbrella of java-team.

--
Regards
Sudip



Bug#961797: ITP: eclipse-remote-services-api -- Eclipse Remote Services API

2020-05-29 Thread Sudip Mukherjee
Package: wnpp
Severity: wishlist
Owner: Sudip Mukherjee 
Control: block 943552 by -1

* Package name: eclipse-remote-services-api
  Version : 2.1.0
  Upstream Author : many
* URL : https://git.eclipse.org/c/ptp/org.eclipse.remote.git/
* License : EPL-1.0
  Programming Lang: Java
  Description : Eclipse Remote Services API

The purpose of this API is to provide a programming interface to remote
services that is agnostic to the actual remote services implementation.
Currently the only implementation supported is JSch.

This is a reintroduction of the package and I only intend to build
org.eclipse.remote.core and org.eclipse.remote.ui as I need them for
#943552.

This will be maintained under the umbrella of java-team.

--
Regards
Sudip



Bug#961799: ITP: libdrpm -- library for making, reading and applying deltarpm packages

2020-05-29 Thread Peter Pentchev
Package: wnpp
Severity: wishlist
Owner: Peter Pentchev 
Control: block 912338 by -1

* Package name: libdrpm
  Version : 0.4.1
  Upstream Author : Matej Chalk 
* URL : https://github.com/rpm-software-management/drpm
* License : BSD-3-clause
  Programming Lang: C
  Description : library for making, reading and applying deltarpm packages

The drpm package provides a library for making, reading and applying
deltarpms, compatible with the original deltarpm packages.

This library is required by the createrepo-c library and set of tools
(https://bugs.debian.org/912338). Both will be maintained as part of
the RPM packaging team.


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Bug#961801: ITP: zchunk -- compress a file into independent chunks

2020-05-29 Thread Peter Pentchev
Package: wnpp
Severity: wishlist
Owner: Peter Pentchev 
Control: block 912338 by -1

* Package name: zchunk
  Version : 1.1.5
  Upstream Author : Jonathan Dieter 
* URL : https://github.com/zchunk/zchunk
* License : BSD-2-clause
  Programming Lang: C
  Description : compress a file into independent chunks

zchunk is a compressed file format that splits the file into independent
chunks. This allows you to only download changed chunks when
downloading a new version of the file, and also makes zchunk files
efficient over rsync.

zchunk files are protected with strong checksums to verify that the file
you downloaded is, in fact, the file you wanted.

This library is required by the createrepo-c library and set of tools
(https://bugs.debian.org/912338). Both will be maintained as part of
the RPM packaging team.


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Re: autopkgtest question: pass on local but fail on salsa-ci

2020-05-29 Thread Inaki Malerba
Hi Hideki,

El 28/5/20 a las 16:17, Hideki Yamane escribió:
> 
>  Thanks for your reply :)
> 
> On Tue, 26 May 2020 16:55:17 +0200
> Joël Krähemann  wrote:
>> Just looked at it, thought I am not using gitlab for CI. Might be you
>> have to permit output to stderr.
> 
> 
> On Tue, 26 May 2020 22:10:17 +0200
> Johannes Schauer  wrote:
>> https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961584
> 
>  I'd watch how lxc issue goes and then check it is related to stderr.
>  
> 

This issue should be workarounded on the pipeline since [0]. Try
retrying the job, it should work.

0_ https://salsa.debian.org/salsa-ci-team/pipeline/-/merge_requests/232

-- 
- ina



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Bug#961805: ITP: libcustompwiz -- Library to load mzML/mzXML files (dev files)

2020-05-29 Thread Filippo Rusconi
Package: wnpp
Severity: wishlist
Owner: Filippo Rusconi 
 .
* Package name: libcustompwiz
  Version : 3.0.0
  Upstream Author : Filipo Rusconi and Proteowizard authors
* URL : https://salsa.debian.org/debichem-team/custompwiz
* License : GPL-3+
  Programming Lang: C++
  Description : Library to load mzML/mzXML files (dev files)
 .
 Description: Library to load mzML/mzXML files (dev files)
 .
 This library is a dumbed-down version of the Proteowizard library.
 This library only contains the required features to 
 load standard mzML/mzXML mass spectrometry data files.

 The original project, that I used to package has abandoned the autotools build
 system and the bjam-based build system is not acceptable by me for its
 unbearable complexity. 
 .
 The only features that are most often used by most projects  from the original
 library are the mass spectrometry data file loading features (files in the
 mzML/mzXML standard format). A number of projects have included this subset
 directly in their source tree. I want to be able to prune that code from these
 projects' source tree and link to this library when I package the projects for
 Debian (for example, the toppic project that I uploaded recently to NEW).
 .
 See http://proteowizard.sourceforge.net/ for the original project.

Ciao
Filippo

-- 

⢀⣴⠾⠻⢶⣦⠀  Filippo Rusconi, PhD
⣾⠁⢠⠒⠀⣿⡁   Research scientist at CNRS
⢿⡄⠘⠷⠚⠋⠀   Debian Developer
⠈⠳⣄  http://msxpertsuite.org
  http://www.debian.org



Bug#961806: ITP: libmodulemd -- C Library for manipulating module metadata files

2020-05-29 Thread Peter Pentchev
Package: wnpp
Severity: wishlist
Owner: Peter Pentchev 
Control: block 912338 by -1

* Package name: libmodulemd
  Version : 2.9.4
  Upstream Author : Stephen Gallagher , Igor Gnatenko 

* URL : https://github.com/fedora-modularity/libmodulemd
* License : Expat
  Programming Lang: C
  Description : C Library for manipulating module metadata files

The libmodulemd API provides an interface for handling metadata
files describing the modular repositories introduced in the Fedora
project and RedHat Enterprise Linux.

This library is required by the createrepo-c library and set of tools
(https://bugs.debian.org/912338). Both will be maintained as part of
the RPM packaging team.


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