Bug#861721: ITP: e-mem -- Efficient computation of Maximal Exact Matches for very large genomes
Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: e-mem Version : 0.0+20160706 Upstream Author : Nilesh Khiste, Lucian Ilie * URL : http://www.csd.uwo.ca/~ilie/E-MEM/ * License : GPL Programming Lang: C++ Description : Efficient computation of Maximal Exact Matches for very large genomes E-MEM enables efficient computation of Maximal Exact Matches (MEMs) that does not use full text indexes. The algorithm uses much less space and is highly amenable to parallelization. It can compute all MEMs of minimum length 100 between the whole human and mouse genomes on a 12 core machine in 10 min and 2 GB of memory; the required memory can be as low as 600 MB. It can run efficiently genomes of any size. Extensive testing and comparison with currently best algorithms is provided. . Mummer has many different scripts where one of the key program is MEM computation. In all the scripts, the MEM computation program can be replaced with e-mem with ease for better performance. Remark: I wonder whether the package name is not to generic but do not see a really strong reason to rename the package. The package will be maintained by the Debian Med team at https://anonscm.debian.org/git/debian-med/e-mem.git
Re: policy for shipping sysctl.d snippets in packages?
On Sun, Apr 30, 2017 at 2:22 PM, Wouter Verhelst wrote: > On Sat, Apr 29, 2017 at 03:48:09PM -0400, Tom H wrote: >> On Thu, Apr 27, 2017 at 3:18 AM, Wouter Verhelst wrote: >>> >>> I didn't say RPM *doesn't* deal with changed files; I said ours >>> deals with it better. I stand by that. >> >> Sure; and an rpm or emerge user'll tell you that dpkg is inferior >> because an interactive upgrade's a crazy thing to do. > > Yes, sure. This discussion is getting increasingly side-tracked though. > > The original question was "should I install defaults in /etc or /usr?" > to which I replied that in Debian, we've traditionally done the former > rather than the latter, and that the latter feels like a result of an > ecosystem (other than ours) where dealing with conflicting changes to > configuration files is frowned upon. I think our way is better, but > I'm sure others disagree. If Debian decides to drop into "/etc" files that are dropped into "/usr/lib" (or "/lib") upstream because rpm and others can't handle config file upgrades, it would be a decision not based on facts.
Re: policy for shipping sysctl.d snippets in packages?
On Wed, May 03, 2017 at 04:51:27AM -0400, Tom H wrote: > On Sun, Apr 30, 2017 at 2:22 PM, Wouter Verhelst wrote: > > On Sat, Apr 29, 2017 at 03:48:09PM -0400, Tom H wrote: > >> On Thu, Apr 27, 2017 at 3:18 AM, Wouter Verhelst wrote: > >>> > >>> I didn't say RPM *doesn't* deal with changed files; I said ours > >>> deals with it better. I stand by that. > >> > >> Sure; and an rpm or emerge user'll tell you that dpkg is inferior > >> because an interactive upgrade's a crazy thing to do. > > > > Yes, sure. This discussion is getting increasingly side-tracked though. > > > > The original question was "should I install defaults in /etc or /usr?" > > to which I replied that in Debian, we've traditionally done the former > > rather than the latter, and that the latter feels like a result of an > > ecosystem (other than ours) where dealing with conflicting changes to > > configuration files is frowned upon. I think our way is better, but > > I'm sure others disagree. > > If Debian decides to drop into "/etc" files that are dropped into > "/usr/lib" (or "/lib") upstream because rpm and others can't handle > config file upgrades, it would be a decision not based on facts. You completely misunderstood what I said. EOT for me. -- < ron> I mean, the main *practical* problem with C++, is there's like a dozen people in the world who think they really understand all of its rules, and pretty much all of them are just lying to themselves too. -- #debian-devel, OFTC, 2016-02-12
Bug#861753: ITP: measurement-kit -- Portable C++11 network measurement library
Package: wnpp Severity: wishlist Owner: "Iain R. Learmonth" * Package name: measurement-kit Version : 0.6.0 Upstream Author : OONI * URL : https://github.com/measurement-kit/measurement-kit * License : BSD-2-clause Programming Lang: C++ Description : Portable C++11 network measurement library MeasurementKit is a library that implements open network measurement methodologies (performance, censorship, etc.) and targets mobile platforms (Android and iOS). It is meant to be embedded by third party applications with specific network measurement needs and/or to be used by researchers as a basis to implement novel tools. --- This package will be maintained by the Internet Measurement Packaging Team . Thanks, Iain.
Bug#861779: ITP: tss2 -- IBM's TCG Software Stack (TSS) for TPM 2.0 and related utilities
X-Debbugs-CC: debian-devel@lists.debian.org Package: tss2 Version: 851 Severity: wishlist I plan to create a new package, tss2, which is developed by Kenneth Goldman from IBM. TSS2 is a user space Trusted Computing Group's Software Stack (TSS) for TPM 2.0. It implements the functionality equivalent to the TCG TSS working group's ESAPI, SAPI, and TCTI layers (and perhaps more) but with a hopefully far simpler interface. It comes with about 80 "TPM tools" that can be used for rapid prototyping, education and debugging. The package is of BSD license. The following is the current URL for the upstream package: https://sourceforge.net/projects/ibmtpm20tss/files/ibmtss851.tar Best Regards, Vicky
Bug#861791: ITP: node-create-ecdh -- create browserifiable ECDH
Package: wnpp Severity: wishlist Owner: Pirate Praveen X-Debbugs-CC: debian-devel@lists.debian.org * Package name: node-create-ecdh Version : 4.0.0 Upstream Author : Calvin Metcalf * URL : https://github.com/crypto-browserify/createECDH * License : Expat Programming Lang: JavaScript Description : create browserifiable ECDH In io.js or node >= 0.11 this module is just a shortcut to crypto.createECDH. In node <= 0.11 or the browser this is a pure JavaScript implimentation, more specifically a wrapper around elliptic to give it the same API as node. . Node.js is an event-based server-side JavaScript engine. signature.asc Description: OpenPGP digital signature
Bug#861792: ITP: lr -- list files, recursively
Package: wnpp Severity: wishlist Owner: Nicolas Braud-Santoni -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 * Package name: lr Version : 0.4 Upstream Author : Leah Neukirchen * URL : https://github.com/chneukirchen/lr * License : MIT Programming Lang: C Description : list files, recursively lr is a new tool for generating file listings, which includes the best features of ls(1), find(1), stat(1) and du(1). It has a powerful and user-friendly filter syntax, sorting and formatting capabilities. Differences with find(1) and ls(1) are hilighted on the homepage: https://github.com/chneukirchen/lr#benefits -BEGIN PGP SIGNATURE- iQJNBAEBCgA3FiEEiWEbFKE2h/s1SpJPnU+IAQz+GeMFAlkKxnkZHG5pY29sYXNA YnJhdWQtc2FudG9uaS5ldQAKCRCdT4gBDP4Z4zBVEADZNNtXEPbSLEj/p1OsLvHb /0YNe0/on9IEMJjtC0aG9EGHPOwfJnbbMrehZMXOzpZHH6hU7SUGs4Wb0Gzw4VKb dZPwC7pyeA4Ogs8JGfsTK2i5ooTYpeLpKwfQPxrpSkSblpfAVLhlnfzSu3x6Yz22 YW0ZqTgEK2GtOw2pyzgXdwihjyKRJn0qmzRPLcNbfrDzP9WVdSsIs9PwfCe0v8pu 14mk3E/FRLiTk5MXpijZPlfgvL8+mX50grgaeQ3MiMBqc5aPf9Miru/K00YI83GH GUE9OKBWMWt0YWy0SkONLQmYhdiKaadHZr+2WtrCxyMj3BHU3lCCQeiVeCKg31Wd If7XN2/a0QMSE5pC2rAUQD0hEQ1hPgOx4g1znx7SI3+YNt2CuoKGBYDR4Fk9s8k6 J1l9WPMTuEpaxaIoCIftmH9EmNpuC2XVyL0Vd+DOLu1E5WbIpnGfgOWaxlH48f8Z B5Myr9AHzxLQPfj/AYPAaLIQ2oEut+oVqs1IcYqlMo9cUus32ylp5Onv86rzrMOG yKCa0QfI5KsLe/Cw28a8szqdQ5G9tytRFJepUEChHZhEj8OJ13AZMJfBSHeVoCJ8 8O4kUkiqFTo1TXJ6BGa/awex3vziVdMdhezwHtswmBT5Vxq2j4KyawMW905jT2HT zQzIB1dcQJ8JQeSUNR7BnQ== =OEJ+ -END PGP SIGNATURE-
Bug#861793: ITP: xe -- simple xargs and apply replacement
Package: wnpp Severity: wishlist Owner: Nicolas Braud-Santoni -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 * Package name: xe Version : 0.7.0 Upstream Author : Leah Neukirchen * URL : https://github.com/chneukirchen/xe * License : CC0 Programming Lang: C Description : simple xargs and apply replacement xe is a new tool for constructing command lines from file listings or arguments, which includes the best features of xargs(1) and apply(1). xe means "execute for every ...". It provides simple(r) parsing of its input, does not invoke a shell by default, can execute multiple commands in parallel, ... Differences with xargs(1) and apply(1) are hilighted on the homepage: https://github.com/chneukirchen/xe#benefits -BEGIN PGP SIGNATURE- iQJNBAEBCgA3FiEEiWEbFKE2h/s1SpJPnU+IAQz+GeMFAlkKxpYZHG5pY29sYXNA YnJhdWQtc2FudG9uaS5ldQAKCRCdT4gBDP4Z4zgUEACV2o3aSZA0M1gE2oI7anVl 1DjfUZrFAFEYRDiSE25/8Rz648qlLbZpxSBbwCpQCbBE5w2cvDcAzEB5B9UXsioh +IERJtqtrArx4URTbKKGvVY468ucfBBw1YN2ji9QZld6T8dcbeZsmsxVbqDkYh8P TKQiCDCxxl4+FIEdh161+6OnY7/m/jv1/e7URXls9tVvVPAqSiBPvxujWJE364gr 4TW2aeFj9gScZtAnCyrq9nAnSPDWYzv+0NNhT7u3WwIxjtRqsNHXZot1cgn/Py6S Rxmq3UgvOSlV0YHCJplpPUhNFVbqCEca66mPCEmhkpFNlun22RFrSGeaPB+OL8pY C1B2JuApkdsySWc/z+LMCwYfthOoumyQAzz0fcJLtJaph+YDszt6gzZnoJm3rCRo MAEOt0lIU9fM98YjNrwAD0Y3bq9/wOM62rvrPSwfIRt2LHsrC0d7IeuRPpr3oTJL YLFar4lBtrMNfcTeEQepc8iOJcPGOf3brn0FI6jAcOWzqWmFJ4rVGawG6xg4OvCh 0zK9Qp20HJ7tKDnDA9u5Hd/+oUnqXPnS4jp2BI6dElOvWhHq448r7VhDktuNcV35 91BjS+fhNmmsI8ZZbnQ/u6qZ26d7ChW/e3o3pFiWtxYv+n4886ZooFH795GT+RPA L1FPB5dghCiDsbQ/hAKf3Q== =XyIq -END PGP SIGNATURE-
Bug#861795: ITP: node-hawk -- HTTP Hawk Authentication Scheme
Package: wnpp Severity: wishlist Owner: Pirate Praveen X-Debbugs-CC: debian-devel@lists.debian.org * Package name: node-hawk Version : 6.0.1 Upstream Author : Eran Hammer (http://hueniverse.com) * URL : https://github.com/hueniverse/hawk#readme * License : BSD-3-Clause Programming Lang: JavaScript Description : HTTP Hawk Authentication Scheme Hawk is an HTTP authentication scheme using a message authentication code (MAC) algorithm to provide partial HTTP request cryptographic verification. For more complex use cases such as access delegation, see Oz. . Node.js is an event-based server-side JavaScript engine. signature.asc Description: OpenPGP digital signature
