Bug#823396: ITP: beast2-mcmc -- Bayesian MCMC phylogenetic inference

2016-05-04 Thread Andreas Tille
Package: wnpp
Severity: wishlist
Owner: Andreas Tille 

* Package name: beast2-mcmc
  Version : 2.4.1
  Upstream Author : Alexei Drummond , Andrew Rambaut 

* URL : https://github.com/CompEvol/beast2
* License : LGPL
  Programming Lang: Java
  Description : Bayesian MCMC phylogenetic inference
 BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
 sequences. It is entirely orientated towards rooted, time-measured
 phylogenies inferred using strict or relaxed molecular clock models. It
 can be used as a method of reconstructing phylogenies but is also a
 framework for testing evolutionary hypotheses without conditioning on a
 single tree topology. BEAST uses MCMC to average over tree space, so that
 each tree is weighted proportional to its posterior probability. Included
 is a simple to use user-interface program for setting up standard
 analyses and a suit of programs for analysing the results.
 .
 This is no new upstream version of beast-mcmc (1.x) but rather a rewritten
 version.


Remark: This package will be maintained by the Debian Med team at
https://anonscm.debian.org/git/debian-med/beast2-mcmc.git



Re: closing bugs against stable versions when a package is RMd from sid

2016-05-04 Thread Jonathan Dowland
Dear gregor (and others off-list),

On Fri, Apr 29, 2016 at 12:17:36PM +0200, gregor herrmann wrote:
> The BTS is version-aware and knows/displays that the bug still
> affects the version in stable.

I am aware that the BTS is version-aware, but where I have got confused is I
was assuming that mailing XX-done is "the old way" and did not include
version information. I've since discovered that the removed-package closure
email does include a fake version in a pseudo-header, so the BTS version
feature is being used after all.

Thanks again



Re: Packaging of static libraries

2016-05-04 Thread Jakub Wilk

* Jakub Wilk , 2016-04-14, 18:06:
It would be helpful if we could check if a dynamic binary is linked to 
a static library from another package; but I'm not aware of any 
reliable method to implement such check.


Maybe we could exploit the fact that static libraries are normally 
stripped, unlike the freshly built code. So if there's large amount of 
code that doesn't have corresponding debugging information in the 
-dbgsym package, it might be because the binary is linked to a static 
library.


--
Jakub Wilk



Bug#823416: ITP: libjs-jquery-migrate -- Migrate older jQuery code to jQuery 1.9+

2016-05-04 Thread Jean-Michel Vourgère
Package: wnpp
Severity: wishlist
Owner: "Jean-Michel Vourgère" 

* Package name: libjs-jquery-migrate
  Version : 1.2.1
  Upstream Author : jQuery Foundation, Inc. and other contributors
* URL : https://plugins.jquery.com/migrate/
* License : MIT
  Programming Lang: Javascript
  Description : Migrate older jQuery code to jQuery 1.9+

That small javascript library is already used by a few packages:

dokuwiki: /usr/share/dokuwiki/lib/scripts/jquery/jquery-migrate.js
dokuwiki: /usr/share/dokuwiki/lib/scripts/jquery/jquery-migrate.min.js
dotclear: /usr/share/dotclear/web/admin/js/jquery/jquery-migrate-1.2.1.js
galette: /usr/share/galette/includes/jquery/jquery-migrate-1.2.1.min.js
moodle: /usr/share/moodle/lib/jquery/jquery-migrate-1.2.1.js
moodle: /usr/share/moodle/lib/jquery/jquery-migrate-1.2.1.min.js
opennebula-sunstone: 
/usr/share/opennebula-sunstone/public/vendor/4.0/jquery-migrate.min.js
otrs2: 
/var/lib/otrs/httpd/htdocs/js/thirdparty/jquery-migrate-1.2.1/jquery-migrate.js
owncloud: /usr/share/owncloud/core/js/jquery-migrate-1.2.1.js
owncloud: /usr/share/owncloud/core/js/jquery-migrate-1.2.1.min.js
python-xstatic-jquery-migrate: 
/usr/lib/python2.7/dist-packages/xstatic/pkg/jquery_migrate/data/jquery-migrate.js
python-xstatic-jquery-migrate: 
/usr/lib/python2.7/dist-packages/xstatic/pkg/jquery_migrate/data/jquery-migrate.min.js
wordpress: /usr/share/wordpress/wp-includes/js/jquery/jquery-migrate.js
wordpress: /usr/share/wordpress/wp-includes/js/jquery/jquery-migrate.min.js



Bug#823425: ITP: chez-scheme -- Implementation of the R6RS Scheme language

2016-05-04 Thread Barak A . Pearlmutter
Package: wnpp
Owner: Barak A. Pearlmutter 
Severity: wishlist

* Package name: chez-scheme
  Version : 9.4
  Upstream Author : R. Kent Dybvig and others
* URL or Web page : https://github.com/cisco/ChezScheme
* License : Apache 2
  Description : Implementation of the R6RS Scheme language

Cisco has released Chez Scheme under a free license.
All hail our new routing overlords.



EOL of fglrx-driver

2016-05-04 Thread Patrick Matthäi
Hello Debian community,

I would like to announce the end of life of the non-free fglrx-driver in
Debian!

Before Ubuntu announced it, I'd like to remove it, but I know that still
many people are using this driver package and after nearly 7 1/2 years
maintainance it is not so easy to give it up.. But it has to be done,
radeon and amgpu are on a good way and also developed by AMD itself!

Many many thanks especially to Andreas Beckmann and Michael Gilbert for
their maintainance in the pkg-fglrx team from me! I were very happy to
work with both of you and to support you to become a DD :=)

If nobody has got a better plan with the fglrx packages or something
like that, I would fill a RM within the next weeks.


Cheers




RE:EOL of fglrx-driver

2016-05-04 Thread PICCA Frederic-Emmanuel
Hello, 

first thanks for your hard work.

I am using fglrx-driver for OpenCL on my W5100 and W7100 amd GPUs.
Do you know if there will be a plan in order to support OpenCL on amd for 
strech ?

Cheers

Frederic


Re: using whiptail and translated strings from arbitrary scripts

2016-05-04 Thread Osamu Aoki
Hi,

On Wed, Apr 27, 2016 at 02:28:22PM +0200, Daniel Pocock wrote:
> 
> 
> On 27/04/16 14:00, Antonio Terceiro wrote:
> > On Tue, Apr 26, 2016 at 09:32:02PM +0200, Daniel Pocock wrote:
> >> 
> >> It is well documented how developers should create po files for
> >> i18n support in their debconf configuration questions during
> >> package install[1].
> >> 
> >> What about arbitrary scripts that are run from the command line
> >> and don't use debconf to store the user responses?  How should
> >> they interact with whiptail and translated strings?  Is there
> >> either a document explaining how to do this or any existing
> >> script that provides a good example, in a way that makes it easy
> >> for Debian translators to support the package containing the
> >> script?
> > 
> > the gettext documentation itself?
> > 
> > https://www.gnu.org/software/gettext/manual/html_node/Preparing-Shell-Scripts.html
> >
> >  All you need to do is make sure is that the installed package puts
> > the compiled .mo files in the right location so gettext finds
> > them.

If you are looking for an example code, I have one for you as im-config
(*).

im-config is an i18n shell script with Gnome/KDE/dialog interface.  Most
asain localization tasks include this.

 https://packages.qa.debian.org/i/im-config.html
 http://anonscm.debian.org/cgit/collab-maint/im-config.git

Oops.  Aron added the new whiptail support.  Time to package a new
version :-)

*) im-config is not run during the installation since it's configuration
system sets the most reasonable choice as default.  But user can change
it via console/GUI.

Osamu

PS: If I had more time, I could have written it in Python to be nicer
looking ... but the shell approach was simple and light by not
introducing many dependencies.
 



Re: using whiptail and translated strings from arbitrary scripts

2016-05-04 Thread Osamu Aoki
Hi,

On Wed, Apr 27, 2016 at 02:29:19PM +, Bas Wijnen wrote:
> Debian translators just translate packaging texts.  Everything else is done by
> upstream (which can be the same people, but it is not organized by Debian
> AFAIK).

I am not sure but my impression is that the i18n team seems to translate
not only dbconf but upstream po files too.
  https://www.debian.org/international/
  https://www.debian.org/international/l10n/po/rank
  https://www.debian.org/international/l10n/po/fr (and similar)

As long as po files are organized in the normal place of the source tree
and the package is rated interesting enough to be translated for i18n
folks, you will get nice i18n bug reports with po files.

I usually add such po files as debian changes when I get them and also
forward such po files to the upstream.

Osamu