Bug#813988: ITP: spades -- genome assembler for single-cell and isolates data sets
Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: spades Version : 3.6.2 Upstream Author : Saint-Petersburg Academic University * URL : ttp://spades.bioinf.spbau.ru * License : GPL-2 Programming Lang: C++, Python Description : genome assembler for single-cell and isolates data sets The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads. This package will be maintained by the Debian Med Packaging Team. at https://anonscm.debian.org/git/debian-med/spades.git
Bug#814000: ITP: cwltool -- Common workflow language reference implementation
Package: wnpp Severity: wishlist Owner: Debian Med team * Package name: cwltool Version : 1.0.20160203221531 Upstream Author : Common Workflow Language working group * URL : http://www.commonwl.org * License : Apache-2.0 Programming Lang: Python Description : Common workflow language reference implementation This is the reference implementation of the Common Workflow Language. It is intended to be feature complete and provide comprehensive validation of CWL files as well as provide other tools related to working with CWL. This is written and tested for Python 2.7. The reference implementation consists of two packages. The "cwltool" package is the primary Python module containing the reference implementation in the "cwltool" module and console executable by the same name. The "cwl-runner" package is optional and provides an additional entry point under the alias "cwl-runner", which is the implementation-agnostic name for the default CWL interpreter installed on a host. The Debian Med team will be maintaining this package. I am also the CWL Community Engineer.
Bug#814031: ITP: git-build-recipe -- construct a Git branch from a recipe
Package: wnpp Severity: wishlist Owner: Colin Watson * Package name: git-build-recipe Version : 0.2.1 Upstream Author : Colin Watson * URL : https://launchpad.net/git-build-recipe * License : GPL-3 Programming Lang: Python 3 Description : construct a Git branch from a recipe git-build-recipe takes a "recipe" which specifies several Git branches to combine in a certain fashion as input for a Debian-format source package, and provides the resulting branch as output. This is a translation to git of bzr-builder (https://launchpad.net/bzr-builder), and it's used to implement https://help.launchpad.net/Packaging/SourceBuilds for git. It's useful for people to be able to install this locally so that they can easily reproduce what Launchpad does with their recipe, and perhaps people will find other uses for it too. -- Colin Watson [cjwat...@ubuntu.com]
Before I send a bug report to change DebTags please do some sanity check
Hi Enrico and who else might be interested in DebTags, thanks a lot for your continuous effort about DebTags. It is really appreciated and comes perfectly right in time since our current Debian Med sprint finally was dedicated to tagging and categorising and finding some common denominator with the bioinformatics comunity represented here by Elixir who intends to create a sensible classification of biotools[1]. While I provided them with a rich data set out of UDD about ready packaged tools my Debian Med folks now realised what I kept on telling them since years: We need to be way more focussed on proper DebTags starting by finding proper DebTags first and than start doing the work. :-) As some outcome of our brainstorming here I created a new branch edam in Git[2] and started editing the facets and tags how *I* think it could be useful. I would really like to hear your opinion what you might think about my changes which are explained in the file edam-changes.txt. I also added the file edam-concepts.txt by Jon Ison which is a more extensive set of potential tags which is probably not useful for the moment but might add ideas for future tags. If you consider my approach useful in principle I would start a discussion on the Debian Med mailing list about the practical details. If you have general criticism about my approach please tell me in advance and give hints how I could increase the procedure to review the DebTags scheme for the biological fields of Debian Med. Kind regards and thanks again for your work Andreas. [1] https://bio.tools/ [2] http://anonscm.debian.org/cgit/debtags/vocabulary.git -- http://fam-tille.de
Bug#814045: ITP: fake-factory -- Faker is a Python library that generates fake data
Package: wnpp Severity: wishlist Owner: Christopher Baines * Package name: fake-factory Version : 0.5.3 Upstream Author : Daniele Faraglia * URL : http://github.com/joke2k/faker * License : Expat Programming Lang: Python Description : Faker is a Python library that generates fake data The fake data can be used to bootstrap a database, create XML documents, or anonymize data taken from a production service. This is a dependency of python-factory-boy, which I intend to work on getting back in to Debian. I intend to maintain this as part of the Python Modules Team.
Bug#814048: ITP: wayland-protocols -- Wayland Compositor Protocols
Package: wnpp Severity: wishlist Owner: "Héctor Orón Martínez" * Package name: wayland-protocols Version : 1.0 Upstream Author : https://lists.freedesktop.org/mailman/listinfo/wayland-devel * URL : https://cgit.freedesktop.org/wayland/wayland-protocols/ * License : Expat Programming Lang: C Description : Wayland Compositor Protocols Wayland protocols that add functionality not available in the Wayland core protocol. Such protocols either add completely new functionality, or extend the functionality of some other protocol either in Wayland core, or some other protocol in wayland-protocols. The package is relevant for building newer weston, GTK3 toolkit and possibly many other software components. I would like to maintain that package inside pkg-xorg team. I do not need a sponsors, co-maintainers would be great.
Bug#814050: ITP: varna -- Visualization Applet for RNA
Package: wnpp Owner: Debian Med team Severity: wishlist * Package name: varna Version : 3-93 Upstream Author : Kevin Darty, Alain Denise and Yann Ponty * URL : http://varna.lri.fr/ * License : GPL-3 Programming Lang: Java Description : Visualization Applet for RNA VARNA is Java lightweight Applet dedicated to drawing the secondary structure of RNA. It is also a Swing component that can be very easily included in an existing Java code working with RNA secondary structure to provide a fast and interactive visualization. . Being free of fancy external library dependency and/or network access, the VARNA Applet can be used as a base for a standalone applet. It looks reasonably good and scales up or down nicely to adapt to the space available on a web page, thanks to the anti-aliasing drawing primitives of Swing. This package is required to update jalview to version 2.9; it will be team maintained by the Debian Med group.
Bug#814060: ITP: golang-github-cznic-strutil -- extensions to standard Go "strings" package
Package: wnpp Severity: wishlist Owner: Dmitry Smirnov X-Debbugs-CC: debian-devel@lists.debian.org, pkg-go-maintain...@lists.alioth.debian.org Package name: golang-github-cznic-strutil Version: 1.0.0 Upstream Author: Jan Mercl <0xj...@gmail.com> License: BSD-3-Clause URL: https://github.com/cznic/strutil Description: extensions to standard Go "strings" package Utilities supplemental to the Go standard "strings" package. signature.asc Description: This is a digitally signed message part.
Bug#814059: ITP: golang-github-cznic-sortutil -- extensions to standard Go "sort" package
Package: wnpp Severity: wishlist Owner: Dmitry Smirnov X-Debbugs-CC: debian-devel@lists.debian.org, pkg-go-maintain...@lists.alioth.debian.org Package name: golang-github-cznic-sortutil Version: 0.0~git20150617 Upstream Author: Jan Mercl <0xj...@gmail.com> License: BSD-3-Clause URL: https://github.com/cznic/sortutil Description: extensions to standard Go "sort" package Utilities supplemental to the Go standard "sort" package. signature.asc Description: This is a digitally signed message part.
Bug#814066: ITP: maven-osgi -- Maven-OSGi integration library
Package: wnpp Owner: Christopher Hoskin Severity: wishlist X-Debbugs-CC: debian-devel@lists.debian.org,debian-java.lists.debian.org * Package name: maven-osgi Version : 0.2.0 Upstream Author : Apache Software Foundation * URL : https://maven.apache.org/shared/maven-osgi/ * License : Apache-2.0 Programming Lang: Java Description : Maven-OSGi integration library maven-osgi provides a helper class with functions for deriving OSGi bundle names and versions from a Maven artifact.
50.000 binary packages
Hi, seen this morning: $ grep -c '^Package: ' XXX_debian_dists_sid_main_binary-amd64_Packages 50007 -Ralf
