Bug#807802: ITP: pbsuite -- software for Pacific Biosciences sequencing data

2015-12-13 Thread Afif Elghraoui
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 
Control: block -1 by 796644

* Package name: pbsuite
  Version : 15.8.24
  Upstream Author : Adam English 
* URL : http://sourceforge.net/projects/pb-jelly
* License : BSD
  Programming Lang: Python
  Description : software for Pacific Biosciences sequencing data

The PBSuite contains two projects created for analysis of
Pacific Biosciences long-read sequencing data.
* PBJelly - genome upgrading tool
* PBHoney - structural variation discovery

This package will be managed by the Debian Med team.



Bug#807803: ITP: python-intervaltree-bio -- interval tree convenience classes for genomic data

2015-12-13 Thread Afif Elghraoui
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 
Control: block 807802 by -1

* Package name: python-intervaltree-bio
  Version : 1.0.1
  Upstream Author : Konstantin Tretyakov 
* URL : https://github.com/konstantint/intervaltree-bio
* License : MIT
  Programming Lang: Python
  Description : Interval tree convenience classes for genomic data

Convenience classes for loading UCSC genomic annotation records into
a set of interval tree data structures.

This package is needed by the pbhoney package of the pbsuite
and will be built and maintained by the Debian Med team.



Bug#807804: ITP: python-intervaltree -- mutable, self-balancing interval tree

2015-12-13 Thread Afif Elghraoui
Package: wnpp
Severity: wishlist
Owner: Afif Elghraoui 
Control: block 807803 by -1

* Package name: python-intervaltree
  Version : 2.1.0
  Upstream Author : Chaim-Leib Halbert 
* URL : https://github.com/chaimleib/intervaltree
* License : Apache 2.0
  Programming Lang: Python
  Description : mutable, self-balancing interval tree

A mutable, self-balancing interval tree for Python 2 and 3
where queries may be by point, by range overlap, or by range
envelopment. This library was designed to allow tagging text
and time intervals, where the intervals include the lower bound
but not the upper bound.

I'm planning to maintain the package within the python modules
team after I read up on using the git-dpm packaging system.



Bug#807839: ITP: projectile -- project interaction library for Emacs

2015-12-13 Thread Sean Whitton
Package: wnpp
Severity: wishlist
Owner: Sean Whitton 

* Package name: projectile
  Version : 0.13.0
  Upstream Author : Bozhidar Batsov 
* URL : http://batsov.com/projectile/
* License : GPL-3+
  Programming Lang: Emacs Lisp
  Description : project interaction library for Emacs

This library enhances Emacs with easy project management and
navigation. The concept of a project is simple: just a folder
containing a special file.  Currently git, mercurial, darcs and
bazaar repos are considered projects by default.  So are lein, maven,
sbt, scons, rebar and bundler projects.  If you want to mark a folder
manually as a project just create an empty .projectile file in it.

Some of Projectile's features:
 
 * jump to a file in project
 * jump to files at point in project
 * jump to a directory in project
 * jump to a file in a directory
 * jump to a project buffer
 * jump to a test in project
 * toggle between files with same names but different extensions (e.g. `.h` <-> 
`.c/.cpp`, `Gemfile` <-> `Gemfile.lock`)
 * toggle between code and its test (e.g. `main.service.js` <-> 
`main.service.spec.js`)
 * jump to recently visited files in the project
 * switch between projects you have worked on
 * kill all project buffers
 * replace in project
 * multi-occur in project buffers
 * grep in project
 * regenerate project etags or gtags
 * visit project in dired
 * run make in a project with a single key chord

I intend to maintain this package as part of the pkg-emacsen team.



Bug#807846: ITP: flx -- sorting algorithm for fuzzy matching in Emacs

2015-12-13 Thread Sean Whitton
Package: wnpp
Severity: wishlist
Owner: Sean Whitton 

* Package name: flx
  Version : 0.6.1
  Upstream Author : Le Wang
* URL : https://github.com/lewang/flx
* License : GPL-3+
  Programming Lang: Emacs Lisp
  Description : sorting algorithm for fuzzy matching in Emacs

flx provides intuitive fuzzy matching for Emacs, similar to Sublime
Text's matching.

I'm packaging this as it's a recommendation of projectile, another ITP
of mine.  I intend to maintain it as part of the pkg-emacsen team.



Bug#807851: ITP: emacs-async -- simple library for asynchronous processing in Emacs

2015-12-13 Thread Sean Whitton
Package: wnpp
Severity: wishlist
Owner: Sean Whitton 

* Package name: emacs-async
  Version : 1.4
  Upstream Author : John Wiegley 
* URL : https://github.com/jwiegley/emacs-async
* License : GPL-2+
  Programming Lang: Emacs Lisp
  Description : simple library for asynchronous processing in Emacs

I am packaging this as a build-dependency (for running tests) of flx,
another ITP of mine.  I intend to maintain it as part of the
pkg-emacsen team.



Bug#807856: RFP: golang-github-mitchellh-reflectwalk -- Go library for "walking" complex structures

2015-12-13 Thread Daniel Stender
Package: wnpp
Severity: wishlist
Owner: Daniel Stender 
X-Debbugs-CC: debian-devel@lists.debian.org, 
pkg-go-maintain...@lists.alioth.debian.org
Control: block 740753 by -1 

* Package name: golang-github-mitchellh-reflectwalk
  Version : 0.0~git20150527.0.eecf4c7-1
  Upstream Author : Mitchell Hashimoto
* URL : https://github.com/mitchellh/reflectwalk
* License : Expat
  Programming Lang: Go
  Description : Go library for "walking" complex structures

Reflectwalk is a Go library for "walking" a value in Go using reflection, in 
the same way a directory
tree can be "walked" on the filesystem. Walking a complex structure can allow 
you to do manipulations on
unknown structures such as those decoded from JSON.

This is a requirement for Packer. I'm going to work down the missing packages, 
but put this on RFP
if somebody would be interested in that.

DS

-- 
4096R/DF5182C8
46CB 1CA8 9EA3 B743 7676 1DB9 15E0 9AF4 DF51 82C8
LPI certified Linux admin (LPI000329859 64mz6f7kt4)
http://www.danielstender.com/blog/



Bug#807859: ITP: emacs-noflet -- Emacs Lisp noflet macro for dynamic, local advice

2015-12-13 Thread Sean Whitton
Package: wnpp
Severity: wishlist
Owner: Sean Whitton 

* Package name: emacs-noflet
  Version : 0.20151102
  Upstream Author : Nic Ferrier 
* URL : https://github.com/nicferrier/emacs-noflet
* License : GPL-3+
  Programming Lang: Emacs Lisp
  Description : Emacs Lisp noflet macro for dynamic, local advice

The noflet macro lets Emacs lisp programmers locally override
functions, in the manner of `flet', but with access to the original
function through the symbol `this-fn'.

I am packaging this as a build dependency for projectile, another ITP
of mine.  I intend to maintain it under the pkg-emacsen team.



Bug#807863: ITP: epl -- Emacs Package Library

2015-12-13 Thread Sean Whitton
Package: wnpp
Severity: wishlist
Owner: Sean Whitton 

* Package name: epl
  Version : 0.8
  Upstream Author : Sebastian Wiesner
* URL : https://github.com/cask/epl
* License : GPL-3+
  Programming Lang: Emacs Lisp
  Description : Emacs Package Library

I am packaging this as a dependency of pkg-info-el, another ITP of
mine.  I intend to maintain it as part of the pkg-emacsen team.



Bug#807864: ITP: pkg-info-el -- Emacs Lisp library providing information about Emacs packages

2015-12-13 Thread Sean Whitton
Package: wnpp
Severity: wishlist
Owner: Sean Whitton 

* Package name: pkg-info-el
  Version : 0.6
  Upstream Author : Sebastian Wiesner
* URL : https://github.com/lunaryorn/pkg-info.el
* License : GPL-3+
  Programming Lang: Emacs Lisp
  Description : Emacs Lisp library providing information about Emacs 
packages

I am packaging this as a dependency of projectile, another ITP of
mine.  I intend to maintain it as part of the pkg-emacsen team.



Re: Upcoming version of apt-file - using apt-acquire and incompatibilities

2015-12-13 Thread Joerg Jaspert
On 14154 March 1977, Paul Wise wrote:
>> http://ftp.de.debian.org/debian/dists/experimental/main/Contents-source.diff/>
>>  
>> They now appear.
> Thanks, there are still some missing though:
> testing main/contrib/non-free
> unstable/experimental contrib/non-free

They get generated whenever there are changes.

-- 
bye, Joerg
All my life I've had one dream, to achieve my many goals.



Bug#807868: ITP: zjump -- Jump to frequent directories matching regex

2015-12-13 Thread Thomas Ross
Package: wnpp
Severity: wishlist
Owner: Thomas Ross 

* Package name: zjump
  Version : 1.9
  Upstream Author : "Rupa" 
* URL : https://github.com/rupa/z
* License : WTFPL
  Programming Lang: sh/bash/shell
  Description : Jump to frequent directories matching regex

>From the man page:
Tracks your most used directories, based on 'frecency'.

After  a  short  learning  phase, z will take you to the most 'frecent'
directory that matches ALL of the regexes given on the command line, in
order.

For example, z foo bar would match /foo/bar but not /bar/foo.

..

Frecency is a portmanteau of 'recent' and 'frequency'. It is a weighted
rank  that depends on how often and how recently something occurred. As
far as I know, Mozilla came up with the term.

This package will be maintainted using git. 

The package should actually be called 'Z', but according to reportbug that is
not a valid package name. Are there any suggestions for this?



Bug#807882: ITP: f-el -- Modern API for working with files and directories in Emacs Lisp

2015-12-13 Thread Sean Whitton
Package: wnpp
Severity: wishlist
Owner: Sean Whitton 

* Package name: f-el
  Version : 0.17.3
  Upstream Author : Johan Andersson 
* URL : https://github.com/rejeep/f.el
* License : GPL-3+
  Programming Lang: Emacs Lisp
  Description : Modern API for working with files and directories in Emacs 
Lisp

f.el is a dependency for a lot of popular Emacs addon packages.  In
particular, it's a build dependency of epl, another ITP of mine.  I
intend to maintain it as part of the pkg-emacsen team.