Bug#461402: ITP: cl-unification -- Unification framework for common lisp
Package: wnpp Severity: wishlist Owner: Philipp Benner <[EMAIL PROTECTED]> * Package name: cl-unification Upstream Author : Marco Antoniotti <[EMAIL PROTECTED]> * URL : http://common-lisp.net/project/cl-unification/ * License : BSD Programming Lang: Lisp Description : Unification framework for common lisp The library provides a full blown unification framework for Common Lisp. The notion of unification originated in the field of formal logic and has been used extensively in Computer Science and Programming Languages. Most notably, Prolog uses the full power of unification. -- System Information: Debian Release: lenny/sid APT prefers testing APT policy: (990, 'testing'), (500, 'unstable'), (500, 'stable') Architecture: powerpc (ppc) Kernel: Linux 2.6.18 Locale: LANG=en_IE.UTF-8, LC_CTYPE=en_IE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/bash -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
Re: Possible mass bug filing: missing shared library dependencies
On Thu, Jan 17, 2008, Niko Tyni wrote: > List of binary packages by maintainer ('dd-list -b') appended. I can't > see any chance for false positives here, but please tell me if I'm wrong. I didn't find a list which included Uploaders information in the thread; could you repost a list with maintainer or uploader -> packages mappings for the next round? (dd-list -u) To join the fun, I fixed these packages in SVN: > Sebastien Bacher <[EMAIL PROTECTED]> >libgtk2.0-dev >libpango1.0-dev > > Debian GNOME Maintainers <[EMAIL PROTECTED]> >update-manager-core > > Debian multimedia packages maintainers <[EMAIL PROTECTED]> >liba52-0.7.4-dev > > Loic Minier <[EMAIL PROTECTED]> >libglib2.0-dev > > Gustavo R. Montesino <[EMAIL PROTECTED]> >libgnomedb2-dev lol: > Debian ia32-libs Team <[EMAIL PROTECTED]> >ia32-libs-gtk -- Loïc Minier -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
libburnia/libisofs/cdrskin in Debian.
The libburn packages in Debian are severely outdated and back in June I tried to poke various people to see what was going on. Sean Harshburger is nowhere to be seen despite mails, bugs and so on dating back to August 2006 so I think can be called MIA. cdrskin has been actively maintained as a statically linked binary package and the most active contributor in Debian on this is George Danchev who is almost all the way through NM now just waiting on DAM. Eduard Bloch said he didn't really have enough time to do much with the packages back in June. George filed an RFH on cdrskin which is #450873 I've been looking at it periodically since I suggested that we just use the Ubuntu packages more or less as is. Since then upstream released 0.4.0 which broke the soname (shipped with libburn.so.0 after libburn.so.4) but SVN has fixed this (so that's what I packaged). Upstream also ship a Makefile.am that deliberately builds a static cdrskin that I don't quite get but anyway. I've created new packages for libburn and libisofs based on the Ubuntu ones but modified. As I said I've made cdrskin dynamically linked. I've kept Ubuntu's use of cdbs in the hope that we can standardise on the same packaging (or almost) in both distributions. If uploaded, they would replace the current cdrskin and libburn source packages in the archive and the cdrskin, libburn-1, libburn-dev, libisofs-1 and libisofs-dev binary packages. They are currently available at: http://the.earth.li/~huggie/libburn/ and at least cdskin works fine for me. It's entirely possible I did something stupid in which case send hot patches. I really do think Debian needs something like this for its libburn and cdrskin as the current situation is rather sad. I'm happy to sponsor them in for George to maintain and to continue to do so but I'd rather not maintain them long term. If no one objects I'll upload them in a week or two though I'd prefer someone who really wants to maintain them changes the maintainer and does so. If anyone has any better ideas, let me know though if it is "we've had lots of really good discussion about this and we've got a plan we're going to implement RSN" then I'm not that interested as I was told that in June. -- ,--huggie-at-earth-dot-listuff-thing-stuff--DF5CE2B4--. _| "JarJar Binks^W^WSupport for CRLF<->LF translation in the kernel |_ | must die." - Alexander Viro | ` http://www.earth.li/~huggie/ ---' signature.asc Description: Digital signature
ITP: libpoe-component-ikc-perl -- Perl Inter-Kernel Communication for POE
Package: wnpp * Package name: libpoe-component-ikc-perl Version: 0.2001 Upstream Author: Philip Gwyn <[EMAIL PROTECTED]> * URL: http://search.cpan.org/dist/POE-Component-IKC/ * License: GPL or Perl Artistic Description: POE::Component::IKC provides several Inter-Kernel Communication methods for POE that help exchanging events between POE kernels. -- Ernesto Hernández-Novich - Linux 2.6.18 i686 - Unix: Live free or die! Geek by nature, Linux by choice, Debian of course. If you can't aptitude it, it isn't useful or doesn't exist. GPG Key Fingerprint = 438C 49A2 A8C7 E7D7 1500 C507 96D6 A3D6 2F4C 85E3 -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
Re: Possible mass bug filing: missing shared library dependencies
On 2008-01-17, Niko Tyni <[EMAIL PROTECTED]> wrote: > Olly Betts <[EMAIL PROTECTED]> >xapian-examples Now fixed in SVN. In practice, the missing dependencies will be pulled in by the dependency of libxapian15-dev, so I don't see much practical benefit in uploading for just this change. Cheers, Olly -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
Bug#461486: ITP: luxrender -- rendering system for physically correct 3D image synthesis
Package: wnpp Severity: wishlist Owner: Cyril Brulebois <[EMAIL PROTECTED]> * Package name: luxrender Version : 0.1~rc4 Upstream Authors: PHARR Matt <[EMAIL PROTECTED]> HUMPHREYS Greg <[EMAIL PROTECTED]> VERGAUWEN Terrence <[EMAIL PROTECTED]> ROMANG Jean-Francois <[EMAIL PROTECTED]> BIENKOWSKI Peter <[EMAIL PROTECTED]> BECH Tom <[EMAIL PROTECTED]> et al. * URL : http://luxrender2.org/ * License : GPL (v3 or later) Programming Lang: C++ Description : rendering system for physically correct 3D image synthesis LuxRender is a rendering system for physically correct, unbiased 3D image synthesis. By calculating complex light interactions and using physically accurate cameras and materials, LuxRender is capable of simulating light exactly as in the real world. . Luxrender is directly usable by artists, with the tools and features they need to produce high-quality photorealistic images, especially in areas like architectural visualization, product design, and prototyping. . It also provides with a Blender exporter, a GUI, and a C API that allows programmers to use LuxRender in their own programs. Cheers, -- Cyril Brulebois PS: Sorry if that generates a duplicate for d-d, I put the list in the pseudoheader to ensure the bug gets Cc'd there. /me hopes reportbug will handle that nicely. -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
Usage of linda
Hi James recently merged a little branch from me into mainline dak code, its changelog having: * dak/examine_package.py (check_deb): Remove linda call. It provides no added benefit to lintian anymore. Iow - while you are free to use linda, NEW doesn't use it anymore. During the last few months I did file bugs against lintian requesting the things linda knew that lintian did not knew. All that I noticed got included into lintian (thanks to its maintainers), so we now live without a linda on the ftp-master host.[1] Note that you should check your packages with the *latest* available lintian version. Either by checking on a system running an up2date unstable - or by using the etch-backport of lintian that I maintain on backports.org. That backport is also installed and kept at the latest version on the ftp-master host. I reject based on it. :) [1] Yay, no annoying eastereggs anymore. They arent funny if you see them a hundred of times.. :) -- bye Joerg * maxx hat weasel seine erste packung suse gebracht, der hat mich dafür später zu debian gebracht .oO( und jetzt ist der DD. jeder macht mal fehler.. ) du hast 2 gemacht du warst auch noch advocate :P pgp7qvMVwW38Q.pgp Description: PGP signature
Re: Possible mass bug filing: missing shared library dependencies
Neil Williams <[EMAIL PROTECTED]> writes: >> Aaron M. Ucko <[EMAIL PROTECTED]> >>libncbi6-dev > > (Just a sample of the -dbg and -dev packages) This was genuinely buggy (oops), as it ships a couple of utilities alongside the other content; I've just uploaded a fixed version. Thanks for bringing it to my attention, Niko! -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/[EMAIL PROTECTED] -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
Bug#461506: ITP: altree -- program to perform phylogeny based analyses
Package: wnpp Severity: wishlist Owner: Charles Plessy <[EMAIL PROTECTED]> Package name: altree Version : 1.0.1 Upstream Author : Claire Bardel <[EMAIL PROTECTED]> URL : http://claire.bardel.free.fr/software.html License : GPL Programming Lang: Perl Description : program to perform phylogeny based analyses This software was designed to perform phylogeny based analysis: first, it allows the detection of an association between a candidate gene and a disease, and second, it enables to make hypothesis about the susceptibility loci. The package is already ready: it was prepared by Vincent Danjean, who offered it to the Debian-Med packaging team. http://www-id.imag.fr/Laboratoire/Membres/Danjean_Vincent/deb.html#altree Have a nice day, -- Charles Plessy -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
Bug#461504: ITP: tacg -- command line program for finding patterns in nucleic acids
Package: wnpp Severity: wishlist Owner: Charles Plessy <[EMAIL PROTECTED]> Package name: tacg Version : 4.1.0 Upstream Author : Harry Mangalam, tacg Informatics URL : http://sourceforge.net/projects/tacg License : GPL and others Programming Lang: C (tacg), Perl (CGI) Description : command line program for finding patterns in nucleic acids tacg is a character-based, command line tool for unix-like operating systems for pattern-matching in nucleic acids and performing some of the basic protein manipulations. It was originally designed for restriction enzyme analysis of DNA, but has been extended to other types of matching. It now handles degenerate sequence input in a variety of matching approaches, as well as patterns with errors, regular expressions and TRANSFAC-formatted matrices. . It was designed to be a grep for DNA and like the original grep, its capabilities have grown so that now the author has to keep calling up the help page to figure out which flags (now ~50) mean what. tacg is NOT a GUI application in any sense. However, it's existance as a strictly command-line tool lends itself well to Webification and wrapping by various GUI tools and it is now distributed with a web interface form and a Perl CGI handler. Additionally, it can easily be integrated into editors that support shell commands such as nedit. . The use of tacg may be cited as: Mangalam, HJ. (2002) tacg, a grep for DNA. BMC Bioinformatics. 3:8 http://www.biomedcentral.com/1471-2105/3/8 I had to apply an ugly patch in order to compile it with gcc4. Because I am not a C programmer, I barely understand what I did, so I would appreciate comments on the patch: http://svn.debian.org/wsvn/debian-med/trunk/packages/tacg/trunk/debian/patches/to-build-with-gcc4.patch?op=file&rev=0&sc=0 This is a low-quality patch, but it works. The modificaiton of tacg.h was made according to what I found on the mailing lists, and seems to make sense. The modification of SeqFuncs.c is completely heuristic; I used the same numbers as in tacg.h. The modification of SetFlags.c is a quick workaround that does not solve the real problem. Also, you can consult the full copyright file in the same repository: http://svn.debian.org/wsvn/debian-med/trunk/packages/tacg/trunk/debian/copyright?op=file&rev=0&sc=0 I use tacg to search for oligonucleotides in sequence reads: I need to allow mismatches, and want to detect if I (unfortunatley) cloned concatemer artefacts. If you know a better tool, let me know ! Have a nice day, -- Charles Plessy Debian-Med packaging team Wakō, Saitama, Japan
Bug#461510: ITP: treevolve -- simulation of evolution of DNA sequences
Package: wnpp Severity: wishlist Owner: Charles Plessy <[EMAIL PROTECTED]> Package name: treevolve Version : 1.3.2 Upstream Author : Andrew Rambaut & Nick Grassly URL : http://evolve.zoo.ox.ac.uk/software.html?id=Treevolve License : Not found... will enquire. Programming Lang: C Description : simulation of evolution of DNA sequences treevolve will simulate the evolution of DNA sequences under a coalescent model, which allows exponential population growth, population subdivision according to an island model, migration and recombination. In addition different periods of population dynamics can be enforced at different times. For example, a period of exponential growth can be followed by a period of stasis where the population is subdivided into demes. Multiple sets of such simulated sequence data can then be compared to sequence data sampled from a population of interest using suitable statistics, and various evolutionary hypotheses concerning the evolution of this population tested. . Citation: Population dynamics of HIV-1 inferred from gene sequences Grassly NC, Harvey PH & Holmes EC (1999) Genetics 151, 427-438. The package is already ready: it was prepared by Vincent Danjean, who offered it to the Debian-Med packaging team. http://www-id.imag.fr/Laboratoire/Membres/Danjean_Vincent/deb.html#treevolve Have a nice day, -- Charles Plessy -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
Bug#461508: ITP: treeplot -- Phylogenetic tree file converter
Package: wnpp Severity: wishlist Owner: Charles Plessy <[EMAIL PROTECTED]> Package name: treeplot Version : 0.7 Upstream Author : Olivier Langella URL : http://www.pge.cnrs-gif.fr/bioinfo/treeplot/ (invalid) License : GPL Programming Lang: C++ Description : Phylogenetic tree file converter Treeplot is a conversion tool, from "Phylip" phylogenetic tree file to Postscript (.ps), Adobe Illustrator (.ai), Scalable Vector Graphic (.svg), Computer Graphic Metafile(.cgm), Hewlet Packard Graphic Language (.hpgl), xfig file (.fig), gif image file(.gif), PBM Portable aNy Map file (.pnm) The package is already ready: it was prepared by Vincent Danjean, who offered it to the Debian-Med packaging team. http://www-id.imag.fr/Laboratoire/Membres/Danjean_Vincent/deb.html#treeplot Have a nice day, -- Charles Plessy -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
Re: Possible mass bug filing: missing shared library dependencies
On Thu, 2008-01-17 at 19:13:43 +0200, Niko Tyni wrote: > After noticing a few compiled Perl module packages were missing > ${shlibs:Depends} and/or dh_makeshlibdeps, I looked a bit into how > widespread this issue is. > Guillem Jover <[EMAIL PROTECTED]> >libdirectfb-dev Fixed in svn for 1.0.1-6. thanks, guillem -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
Re: Future Debian package candidate web pages: present and future
On 17/01/08 at 23:48 +0100, David Bremner wrote: > > "Sebastian" == Sebastian Pipping <[EMAIL PROTECTED]> writes: > Sebastian>> David Bremner wrote: > > >> I would really like some (approximate) popcon data myself, > >> especially for orphaned packages. > > Sebastian> would be cool, yes. i don't have any clue to do this > Sebastian> yet. if you do please share your thoughts with me to > Sebastian> speed the thing up. deal? :-) > > As far as I understand it (and maybe somebody more informed can > correct me), there is currently no fancy interface (SOAP) to the data > on popcon.debian.org On the other hand, it does not change that > quickly, so grabbing a copy once a week should be reasonable. > > http://qa.debian.org/popcon.php?package=whatever > > obviously has access to the data, so maybe someone on the qa team can > comment. You could simply download it from http://popcon.debian.org/ and parse it... -- | Lucas Nussbaum | [EMAIL PROTECTED] http://www.lucas-nussbaum.net/ | | jabber: [EMAIL PROTECTED] GPG: 1024D/023B3F4F | -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
Bug#461404: ITP: leds-alix -- Source for the LEDs driver of PCEngines ALIX 2/3 boards
Package: wnpp Severity: wishlist Owner: Adam Cécile (Le_Vert) <[EMAIL PROTECTED]> * Package name: leds-alix Version : 0.0.1 Upstream Author : Petr Leibman <[EMAIL PROTECTED]> * URL : https://dev.openwrt.org/ticket/2771 * License : GPL-2 Programming Lang: C Description : Source for the LEDs driver of PCEngines ALIX 2/3 boards This package provides the source code for the leds-alix kernel module. . PCEngines ALIX boards (version 2/3) have three LEDs on front. . This driver allow you to power them on/off. -- System Information: Debian Release: lenny/sid APT prefers testing APT policy: (500, 'testing') Architecture: i386 (i686) Kernel: Linux 2.6.21-6-raq550 (SMP w/1 CPU core) Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/bash