Re: [R] searching for a specific row name in R

2018-08-13 Thread Deepa
ll 925-724-7509 > > > > On 8/13/18, 12:09 AM, "R-help on behalf of Albrecht Kauffmann" < > r-help-boun...@r-project.org on behalf of alkau...@fastmail.fm> wrote: > > Hello Deepa, > > sum(x[,2] == "A501") > or > whi

Re: [R] searching for a specific row name in R

2018-08-13 Thread Deepa
my interest stored in an array. On Tue, Aug 14, 2018 at 9:16 AM, Boris Steipe wrote: > Use the %in% operator: > > help('%in%') > > e.g. > > R > c("d", "v", "4", "s") %in% letters > [1] TRUE TRUE FALSE TRUE > &g

[R] Multiple counters in a single for loop

2018-08-24 Thread Deepa
Hello, Is there an option to include multiple counters in a single for loop in R? For instance, in python there is for i,j in zip(x,range(0,len(x))): Any suggestions? [[alternative HTML version deleted]] __ R-help@r-project.org mailing list

[R] Efficient way of loading files in R

2018-09-07 Thread Deepa
Hello, I am using a bioconductor package in R. The command that I use reads the contents of a file downloaded from a database and creates an expression object. The syntax works perfectly fine when the input size is of 10 MB. Whereas, when the file size is around 40MB the object isn't created. Is

Re: [R] Efficient way of loading files in R

2018-09-07 Thread Deepa
: 5808.00 Virtualization:VT-x L1d cache: 32K L1i cache: 32K L2 cache: 256K L3 cache: 4096K NUMA node0 CPU(s): 0-3 On Fri, Sep 7, 2018 at 3:38 PM Deepa wrote: > Hello, > > I am using a bioconductor package in R. > The comman

Re: [R] Efficient way of loading files in R

2018-09-07 Thread Deepa
ation: cols( .default = col_double(), ID_REF = col_character() ) See spec(...) for full column specifications. Using locally cached version of GPL570 found here: /data//GPL570.soft After this I don't see any output. I had to forcefully stop the execution. On Fri, Sep 7, 2018 at 4:05 PM Deepa

Re: [R] Efficient way of loading files in R

2018-09-07 Thread Deepa
.0 R6_2.2.2 magrittr_1.5 pillar_1.3.0 > [9] stringi_1.2.4rlang_0.2.2 curl_3.2 limma_3.37.4 > [13] xml2_1.2.0 tools_3.5.1 readr_1.1.1 glue_1.3.0 > [17] purrr_0.2.5 hms_0.4.2compiler_3.5.1 pkgconfig_2.0.2 > [21] tidyselect_0

Re: [R] Efficient way of loading files in R

2018-09-07 Thread Deepa
with column specification: cols( .default = col_double(), ID_REF = col_character() ) See spec(...) for full column specifications. |=| 100% 84 MB Using locally cached version of GPL570 found here: /data//GPL570.soft ^C On Fri, Sep 7,

[R] searching for a specific row name in R

2018-08-12 Thread Deepa Maheshvare
Hello Everyone, I have a 1000 x 20 matrix. The second column of the matrix has the names of identifiers. How do I check when a certain identifier is present in the set of 1000 identifier names present in the second column. For instance, let the names of identifiers be A1,A2,...A1000. I want to

[R] Packages for Animal Models & QG analyses

2007-11-27 Thread Deepa Senapathi
Hi, I am looking to do some quantitative genetic analyses using animal models and was wondering if someone could suggest an appropriate package in R. It would help if it was similar to the ASReml genetic analyses software. Thanks, Deepa Senapathi Deepa Senapathi Centre for Agri