1. all functions in R are variables. You can "trick" code tools by writing seq_root2tip=NULL in the same scope but consider (a) C routines are typically part of a package's private interface (b) it might be preferable to use the string "seq_root2tip" with PACKAGE="ape"
2. phytree is not the same as phytree<- : importFrom(phyloseq, "phytree<-") is what you want assuming it's exported) (c.f. `x = phyteee(...)` vs. `phytree(x) <- ...`) Mike C On Thu, Jul 3, 2025, 2:57 PM Sharon Bewick <sbew...@clemson.edu> wrote: > 1. I’m trying to upload my R package. However, I use the ape function > seq_root2tip but for the sake of speed am calling it using .Call: > > toroot<-.Call(seq_root2tip, nt$edge, length(nt$tip.label), nt$Nnode) > > How do I get R to recognize the seq_root2tip function from ape in this C > call? It is throwing up a NOTE that is getting my package rejected: > > shade_branch: no visible binding for global variable ‘seq_root2tip’ > > but seq_root2tip is a function, not a global variable. > > 2. I’m also getting a NOTE about: no visible global function definition > for ‘phy_tree<-’ > > I have declared phy_tree in the NAMESPACE file: > importFrom(phyloseq,phy_tree) > > I don’t know what the problem is… > > Thanks! > Sharon > > [[alternative HTML version deleted]] > > ______________________________________________ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel > [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
