Hi again - I'm working through the final details of a submission. My current problem is that I make use of a dependency of the caret package (kernlab) in one of my vignettes. If I don't include kernlab in my DESCRIPTION file, I get the following ERROR:
* checking re-building of vignette outputs ... [16s] ERROR Error(s) in re-building vignettes: --- re-building 'create_synthetic_data.Rmd' using rmarkdown --- finished re-building 'create_synthetic_data.Rmd' --- re-building 'modeling_with_binary_classifiers.Rmd' using rmarkdown Quitting from lines 56-63 [unnamed-chunk-4] (modeling_with_binary_classifiers.Rmd) Error: processing vignette 'modeling_with_binary_classifiers.Rmd' failed with diagnostics: Required packages are missing: kernlab --- failed re-building 'modeling_with_binary_classifiers.Rmd' If I do include kernlab as a dependency in my DESCRIPTION file, I get the following NOTE: * checking dependencies in R code ... NOTE Packages in Depends field not imported from: 'kernlab' 'randomForest' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. My NAMESPACE file is auto-generated by roxygen and actually says not to edit it. I think the problem is the implicit dependency inside caret, but I'm not sure how to solve it so the automated checks work. When I run this on my own machine, it passes the --as-cran check. Any advice would be greatly appreciated. Thanks! -- Stephen Abrams Divergent Blue <http://www.divergentblue.com/> [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
