Dear list, I'm trying to submit an updated version of R package scoringutils to CRAN (https://github.com/epiforecasts/scoringutils). I built the package using `R CMD build` with Roxygen2 7.3.2 both on Mac and on Ubuntu.
I'm seeing a NOTE related to several HTML validation problems (see below). These are some of the offending Rd files and corresponding source files: • https://github.com/epiforecasts/scoringutils/blob/main/man/ae_median_quantile.Rd, https://github.com/epiforecasts/scoringutils/blob/efb41afd9925ffc4b62963abc0642cc1f7447c22/R/metrics-quantile.R#L559 • https://github.com/epiforecasts/scoringutils/blob/main/man/dss_sample.Rd, https://github.com/epiforecasts/scoringutils/blob/efb41afd9925ffc4b62963abc0642cc1f7447c22/R/metrics-sample.R#L224 • https://github.com/epiforecasts/scoringutils/blob/main/man/interpolate_median.Rd, https://github.com/epiforecasts/scoringutils/blob/efb41afd9925ffc4b62963abc0642cc1f7447c22/R/metrics-quantile.R#L530 I suspect the issue might be related to images that get added using the following code (https://github.com/epiforecasts/scoringutils/blob/efb41afd9925ffc4b62963abc0642cc1f7447c22/R/documentation-templates.R#L106): ``` #' Illustration of required inputs for sample-based forecasts #' @details # Input format #' \if{html}{ #' \out{<div style="text-align: left">} #' \figure{metrics-sample.png}{options: style="width:750px;max-width:100\%;"} #' \out{</div>} #' } #' \if{latex}{ #' \figure{metrics-sample.png} #' } #' @name illustration-input-metric-sample #' @keywords internal NULL ``` I've tried changing @details to @section, tried adding linebreaks, but that didn't help, unfortunately. Any help would be much appreciated, thank you! Best wishes, Nikos CRAN Note: Flavor: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64 Check: HTML version of manual, Result: NOTE Found the following HTML validation problems: ae_median_quantile.html:79:1 (ae_median_quantile.Rd:41): Warning: inserting implicit <p> ae_median_quantile.html:79:1 (ae_median_quantile.Rd:41): Warning: trimming empty <p> ae_median_sample.html:71:1 (ae_median_sample.Rd:35): Warning: inserting implicit <p> ae_median_sample.html:71:1 (ae_median_sample.Rd:35): Warning: trimming empty <p> bias_quantile.html:133:1 (bias_quantile.Rd:85): Warning: inserting implicit <p> bias_quantile.html:133:1 (bias_quantile.Rd:85): Warning: trimming empty <p> bias_sample.html:94:1 (bias_sample.Rd:56): Warning: inserting implicit <p> bias_sample.html:94:1 (bias_sample.Rd:56): Warning: trimming empty <p> crps_sample.html:107:1 (crps_sample.Rd:73): Warning: inserting implicit <p> crps_sample.html:107:1 (crps_sample.Rd:73): Warning: trimming empty <p> dss_sample.html:70:1 (dss_sample.Rd:35): Warning: inserting implicit <p> dss_sample.html:70:1 (dss_sample.Rd:35): Warning: trimming empty <p> get_metrics.forecast_binary.html:82:1 (get_metrics.forecast_binary.Rd:39): Warning: inserting implicit <p> get_metrics.forecast_binary.html:82:1 (get_metrics.forecast_binary.Rd:39): Warning: trimming empty <p> get_metrics.forecast_point.html:92:1 (get_metrics.forecast_point.Rd:50): Warning: inserting implicit <p> get_metrics.forecast_point.html:92:1 (get_metrics.forecast_point.Rd:50): Warning: trimming empty <p> get_metrics.forecast_quantile.html:104:1 (get_metrics.forecast_quantile.Rd:52): Warning: inserting implicit <p> get_metrics.forecast_quantile.html:104:1 (get_metrics.forecast_quantile.Rd:52): Warning: trimming empty <p> get_metrics.forecast_sample.html:100:1 (get_metrics.forecast_sample.Rd:44): Warning: inserting implicit <p> get_metrics.forecast_sample.html:100:1 (get_metrics.forecast_sample.Rd:44): Warning: trimming empty <p> get_pairwise_comparisons.html:43:1 (get_pairwise_comparisons.Rd:74): Warning: inserting implicit <p> get_pairwise_comparisons.html:43:1 (get_pairwise_comparisons.Rd:74): Warning: trimming empty <p> illustration-input-metric-binary-point.html:35:1 (illustration-input-metric-binary-point.Rd:17): Warning: inserting implicit <p> illustration-input-metric-binary-point.html:35:1 (illustration-input-metric-binary-point.Rd:17): Warning: trimming empty <p> illustration-input-metric-nominal.html:35:1 (illustration-input-metric-nominal.Rd:17): Warning: inserting implicit <p> illustration-input-metric-nominal.html:35:1 (illustration-input-metric-nominal.Rd:17): Warning: trimming empty <p> illustration-input-metric-quantile.html:35:1 (illustration-input-metric-quantile.Rd:17): Warning: inserting implicit <p> illustration-input-metric-quantile.html:35:1 (illustration-input-metric-quantile.Rd:17): Warning: trimming empty <p> illustration-input-metric-sample.html:35:1 (illustration-input-metric-sample.Rd:17): Warning: inserting implicit <p> illustration-input-metric-sample.html:35:1 (illustration-input-metric-sample.Rd:17): Warning: trimming empty <p> interpolate_median.html:67:1 (interpolate_median.Rd:34): Warning: inserting implicit <p> interpolate_median.html:67:1 (interpolate_median.Rd:34): Warning: trimming empty <p> interval_coverage.html:83:1 (interval_coverage.Rd:46): Warning: inserting implicit <p> interval_coverage.html:83:1 (interval_coverage.Rd:46): Warning: trimming empty <p> logs_sample.html:81:1 (logs_sample.Rd:46): Warning: inserting implicit <p> logs_sample.html:81:1 (logs_sample.Rd:46): Warning: trimming empty <p> mad_sample.html:77:1 (mad_sample.Rd:42): Warning: inserting implicit <p> mad_sample.html:77:1 (mad_sample.Rd:42): Warning: trimming empty <p> pit_histogram_sample.html:120:32 (pit_histogram_sample.Rd:84): Warning: trimming empty <code> pit_histogram_sample.html:127:32 (pit_histogram_sample.Rd:90): Warning: trimming empty <code> quantile_score.html:119:1 (quantile_score.Rd:76): Warning: inserting implicit <p> quantile_score.html:119:1 (quantile_score.Rd:76): Warning: trimming empty <p> scoring-functions-binary.html:112:1 (scoring-functions-binary.Rd:78): Warning: inserting implicit <p> scoring-functions-binary.html:112:1 (scoring-functions-binary.Rd:78): Warning: trimming empty <p> scoring-functions-nominal.html:73:1 (scoring-functions-nominal.Rd:38): Warning: inserting implicit <p> scoring-functions-nominal.html:73:1 (scoring-functions-nominal.Rd:38): Warning: trimming empty <p> se_mean_sample.html:64:1 (se_mean_sample.Rd:34): Warning: inserting implicit <p> se_mean_sample.html:64:1 (se_mean_sample.Rd:34): Warning: trimming empty <p> wis.html:210:1 (wis.Rd:169): Warning: inserting implicit <p> wis.html:210:1 (wis.Rd:169): Warning: trimming empty <p> R version 4.3.1 (2023-06-16) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 22.04.2 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so; LAPACK version 3.10.0 locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C time zone: Etc/UTC tzcode source: system (glibc) attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_4.3.1 tools_4.3.1 [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
