Reminder that you have to re-install any packages that your oncoPredict package depends on for the new R version 4.1.1. Packages are downloaded/installed to a specific R version. If you switch to another version, everything needs to be reinstalled. I always get this error after upgrading or switching R versions.
� If you’ve already reinstalled and are still getting the error, then maybe it is something with your NAMESPACE or DESCRIPTION file. Like if you are using a package inside a function, but forget to add it to the DESCRIPTION. Or you put it in the DESCRIPTION, but forget to add the @import roxygen directive above your function so that it gets into the NAMESPACE. � Those are the situations that most commonly generate this error, from what I have seen. � From: Danielle Maeser <[email protected]> Sent: Saturday, September 11, 2021 6:28 PM To: [email protected]; R Package Devel <[email protected]> Subject: Re: [R-pkg-devel] Packages required but not available � Hi David, � Yes. I did recently upgrade R. � � On Sat, Sep 11, 2021 at 4:28 PM <[email protected] <mailto:[email protected]> > wrote: Danielle: Did you recently upgrade to R 4.1.1? David -----Original Message----- From: R-package-devel <[email protected] <mailto:[email protected]> > On Behalf Of Danielle Maeser via R-package-devel Sent: Saturday, September 11, 2021 5:10 PM To: R Package Devel <[email protected] <mailto:[email protected]> > Subject: [R-pkg-devel] Packages required but not available Hello, I received the following output from my package, oncoPredict. However, I don't understand how to correct this error. I've tested the advice here: https://stackoverflow.com/questions/14358814/error-in-r-cmd-check-packages-required-but-not-available without success. Any thoughts as to how this error can be fixed? Danielle Maeser *Version: 0.1Check: package dependenciesResult: ERROR � � Packages required but not available: � � �'org.Hs.eg.db', 'TxDb.Hsapiens.UCSC.hg19.knownGene', 'maftools', � � �'TCGAbiolinks'* � * � See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’* * � � manual.Flavor: r-release-macos-x86_64 <https://www.r-project.org/nosvn/R.check/r-release-macos-x86_64/oncoPredict-00check.html>* -- Ph.D. Student Bioinformatics and Computational Biology University of Minnesota � � � � [[alternative HTML version deleted]] ______________________________________________ [email protected] <mailto:[email protected]> mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel � -- Ph.D. Student Bioinformatics and Computational Biology University of Minnesota � [[alternative HTML version deleted]] ______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
