From Bioconductor's perspective, this warning is safe to ignore. But only CRAN
knows whether they do or not.
Note the unusual situation that the check is on the 'devel' branch of R, but
that the package that signals the warning comes from the branch of Bioconductor
meant for R-3.5.* -- CRAN apparently uses 3.5.* package binaries (for both CRAN
& Bioconductor) in R-devel.
Martin Morgan
On 3/6/19, 10:00 AM, "R-package-devel on behalf of Yonghui Dong"
<r-package-devel-boun...@r-project.org on behalf of yonghui.d...@gmail.com>
wrote:
Dear all,
I remember somebody has asked a similar question days ago, but the problem
has not been solved. I am sorry that I ask this question again.
My package can pass the CMD check in my local PC, while when I submit my
package to CRAN, there is one warning:
>Found the following significant warnings:
Warning: 'BiocInstaller' and 'biocLite()' are deprecated, use the
'BiocManager' CRAN
One of my R package dependencies is a bioconductor package xcms. It seems
that packages from Bioconducor cannot be installed now.
More details are given in the directory:
https://win-builder.r-project.org/incoming_pretest/Miso_0.2.1_20190304_095427/Windows/
<https://win-builder.r-project.org/incoming_pretest/Miso_0.2.1_20190304_095427/Windows/>
Thanks a lot for your help.
Dong
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