Dear Bill, The best way to fix your problem is IMHO to have it fixed in lme4. I've cc'ed Ben Bolker (lme4 maintainer) to inform him of this problem.
Best regards, ir. Thierry Onkelinx Statisticus / Statistician Vlaamse Overheid / Government of Flanders INSTITUUT VOOR NATUUR- EN BOSONDERZOEK / RESEARCH INSTITUTE FOR NATURE AND FOREST Team Biometrie & Kwaliteitszorg / Team Biometrics & Quality Assurance thierry.onkel...@inbo.be Havenlaan 88 bus 73, 1000 Brussel www.inbo.be /////////////////////////////////////////////////////////////////////////////////////////// To call in the statistician after the experiment is done may be no more than asking him to perform a post-mortem examination: he may be able to say what the experiment died of. ~ Sir Ronald Aylmer Fisher The plural of anecdote is not data. ~ Roger Brinner The combination of some data and an aching desire for an answer does not ensure that a reasonable answer can be extracted from a given body of data. ~ John Tukey /////////////////////////////////////////////////////////////////////////////////////////// <https://www.inbo.be> 2018-03-21 21:12 GMT+01:00 William Revelle <li...@revelle.net>: > Thanks. I had suspected another package, but couldn’t figure out how to > show that. > > debug(Matrix::rBind) shows that the problem is in lme4 > #with > debug(Matrix::rBind) > > x.df <- structure(list(values = c(9, 6, 8, 7, 10, 6, 2, 1, 4, 1, 5, 2, > 5, 3, 6, 2, 6, 4, 8, 2, 8, 6, 9, 7), items = structure(c(1L, > 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, > 3L, 4L, 4L, 4L, 4L, 4L, 4L), class = "factor", .Label = c("J1", > "J2", "J3", "J4")), id = structure(c(1L, 2L, 3L, 4L, 5L, 6L, > 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, > 5L, 6L), .Label = c("S1", "S2", "S3", "S4", "S5", "S6"), class = > "factor")), row.names = c(NA, > -24L), class = "data.frame") > > mod.lmer <- lme4::lmer(values ~ 1 + (1 | id) + +(1 | items), > data = x.df, na.action = na.omit) > > #it calls rBind and then throws the warning which win.builder then calls > and error. > > Now, I will work on how to get around this (not use lmer?) but at least > now I know the problem. > > Bill > > > > > > On Mar 21, 2018, at 2:04 PM, Joris Meys <jorism...@gmail.com> wrote: > > > > I suspect it is used in a function from another package then. The > devtools function run_examples() allows you to run the examples separately > so you can find the culprit easier. Function check_failures() extracts info > from the check logs. Could be helpful too. > > > > Cheers > > Joris > > > > On Wed, 21 Mar 2018, 19:49 Alexandre Courtiol, < > alexandre.court...@gmail.com> wrote: > > Hi William, > > Perhaps you use rBind indirectly... > > I don't know the best way to check that, but I would try to set a > > debug(rBind) before running some of your code in an interactive session. > > If any function uses rBind, you should notice as it will launch the > > debugger. > > Better ideas are welcome. > > ++ > > > > Alex > > > > On 21 March 2018 at 19:36, William Revelle <li...@revelle.net> wrote: > > > > > Dear friends, > > > > > > When testing my latest version of psych on win.builder, I keep getting > the > > > following Warning: > > > > > > * checking installed files from 'inst/doc' ... OK > > > * checking files in 'vignettes' ... OK > > > * checking examples ... > > > ** running examples for arch 'i386' ... [32s] WARNING > > > Found the following significant warnings: > > > > > > Warning: 'rBind' is deprecated. > > > Deprecated functions may be defunct as soon as of the next release of > > > R. > > > See ?Deprecated. > > > ** running examples for arch 'x64' ... [39s] WARNING > > > Found the following significant warnings: > > > > > > Warning: 'rBind' is deprecated. > > > Deprecated functions may be defunct as soon as of the next release of > > > R. > > > See ?Deprecated. > > > * checking for unstated dependencies in vignettes ... OK > > > > > > I know that rBind is deprecated, but I don’t call it. > > > > > > > > > I have searched my code and as far as I can tell, I do not use rBind > (nor > > > cBind). Nor do any of my examples. > > > > > > Any help would be appreciated. > > > > > > Thanks. > > > > > > Bill > > > > > > > > > William Revelle personality-project.org/revelle.html > > > Professor personality-project.org > > > Department of Psychology www.wcas.northwestern.edu/psych/ > > > Northwestern University www.northwestern.edu/ > > > Use R for psychology personality-project.org/r > > > It is 2 minutes to midnight www.thebulletin.org > > > > > > ______________________________________________ > > > R-package-devel@r-project.org mailing list > > > https://stat.ethz.ch/mailman/listinfo/r-package-devel > > > > > > > > > > > -- > > Alexandre Courtiol > > > > http://sites.google.com/site/alexandrecourtiol/home > > > > *"Science is the belief in the ignorance of experts"*, R. Feynman > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-package-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-package-devel > > William Revelle personality-project.org/revelle.html > Professor personality-project.org > Department of Psychology www.wcas.northwestern.edu/psych/ > Northwestern University www.northwestern.edu/ > Use R for psychology personality-project.org/r > It is 2 1/2 minutes to midnight www.thebulletin.org > > ______________________________________________ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel > [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
