Hi All:
I am working on a new submission of my xtractomatic package (the main change
being the use of https). I develop on a Mac. When I run on the Mac:
devtools::check()
I get no errors, notes, or warnings. However, when I run
devtools::build_win(), the response I get back isL
> * checking for unstated dependencies in vignettes ... OK
> * checking package vignettes in 'inst/doc' ... OK
> * checking re-building of vignette outputs ... WARNING
> Error in re-building vignettes:
> ...
> Quitting from lines 248-261 (Usingxtractomatic.Rmd)
> Error: processing vignette 'Usingxtractomatic.Rmd' failed with diagnostics:
> (converted from warning) Calling 'structure(NULL, *)' is deprecated, as NULL
> cannot have attributes.
> Consider 'structure(list(), *)' instead.
> Execution halted
>
So this error is from my Vignette. The offending lines appear to be:
> ```{r topotagPlot, fig.align = 'center', fig.width = 6, fig.height = 4,
> warning = FALSE}
> require("ggplot2")
> alldata <- cbind(tagData, topo)
> alldata$lon <- alldata$lon - 360
> z <- ggplot(alldata, aes(x = lon,y = lat)) +
> geom_point(aes(colour = mean), size = 2.) +
> scale_shape_manual(values = c(19, 1))
> z + geom_polygon(data = w, aes(x = long, y = lat, group = group), fill =
> "grey80") +
> theme_bw() +
> scale_colour_gradient("Depth") +
> coord_fixed(1.3, xlim = xlim, ylim = ylim) + ggtitle("Bathymetry at marlin
> tag locations")
>
> ```
>
Now the vignette builds fine on my machine, and I can run it by "hand" (as
an R Notebook, executing each chunk) and it works also. Looking at the
offending code chunk, I can honestly say I have no idea what the error message
is referring to. When I run by hand, I have checked that both tagData and
topo are properly defined. But is that the problem, is the error message from
the cbind?
Thanks for any help.
-Roy
**********************
"The contents of this message do not reflect any position of the U.S.
Government or NOAA."
**********************
Roy Mendelssohn
Supervisory Operations Research Analyst
NOAA/NMFS
Environmental Research Division
Southwest Fisheries Science Center
***Note new street address***
110 McAllister Way
Santa Cruz, CA 95060
Phone: (831)-420-3666
Fax: (831) 420-3980
e-mail: roy.mendelss...@noaa.gov www: http://www.pfeg.noaa.gov/
"Old age and treachery will overcome youth and skill."
"From those who have been given much, much will be expected"
"the arc of the moral universe is long, but it bends toward justice" -MLK Jr.
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