On Thu, 20 May 2010, ivo welch wrote:

dear R wizards:

not important.  more a curiosity or esthetics question.

is there a way to extend the standard lm command, so that it takes a new
argument that handles fixed effects?   right now, I have (provided to me
from an expert---I would have never figured this one out):

  diffid <- function(h,id) {
      id <- as.factor(id)[, drop=TRUE]
      apply(as.matrix(h), 2, function(x) x - tapply(x,id,mean)[id]
  }

Simpler would be

   diffid<-function(h,id){ h-ave(h,id)}

which is used as

    r= lm( diffid(y, firmid) ~ diffid(x, firmid ) )

it works, but it would be much nicer if I could just write

   r= lm( y ~ x + z, fixed.effects=firmid )

does this already exists as a package?  or has someone figured out how to
program this?

I would just have used lm(y~x+z+factor(firmid)).  Admittedly, you get a whole 
bunch of uninteresting coefficients in the output, but it's not that hard to 
subset them out.

There are two implementation of this in Bill Venables' course notes on advanced 
programming. I think they are also in 'S Programming', but I can't find my copy 
right now.  These were motivated by computational problems: the full design 
matrix for the linear model was too large for memory at the time (last century).


As a final note, I would strongly discourage
   r= lm( y ~ x + z, fixed.effects=firmid )
as a specification, and would argue for
   r= lm( y ~ x + z, fixed.effects=~firmid )

I think the ability to have some subset of the arguments in a modelling call 
silently treated as formulas was a bad decision, although it must have looked 
user-friendly at the time.

         -thomas

Thomas Lumley                   Assoc. Professor, Biostatistics
tlum...@u.washington.edu        University of Washington, Seattle

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