I am operating Linux via a High Performance Computing environment with a
network of clusters & systems - so its not necessarily something that will be
feasible since R is a globally accessed application on the HPC.
Aside from that, I highly doubt it's the version of R I am using as I was able
to install package Rserve successfully a few weeks ago.
What could be some other possibilities?
Thank you!
----- Original Message -----
From: "David Winsemius [via R]"
<ml-node+2215914-1819898924-258...@n4.nabble.com>
Date: Thursday, May 13, 2010 4:03 pm
Subject: Re: R cannot access the web?
To: Trojan <ypa...@usc.edu>
>
>
>
>
> On May 13, 2010, at 6:29 PM, Trojan wrote:
>
> >
> > Hi,
> >
> > I had originally posted regarding an error when trying to install
>
> > package -
> > GenABEL - it has now become clear that R is not able to connect
> to
> > the net.
> > Below are a couple of things I've tried with the resulting errors
> >
> > I am running R 2.6.2 on Linux e15 X86
>
> Unable to reproduce with a more current version of R (2.10.1 RC
> (2009-12-09 r50695) ) on a Leopard Mac.
>
> download.file("http://www.nytimes.com";, destfile<-tempfile())
> trying URL 'http://www.nytimes.com'
> Content type 'text/html' length unknown
> opened URL
> .......... .......... .......... .......... ..........
> .......... .......... .......... .......... ..........
> .......... ......
> downloaded 116 Kb
>
>
> >
> > How can I fix this?
>
> Have you considered updating your R installation?
>
> --
> David.
>
> > Thank you!
> >
> >
> > 1) download.file("http://www.nytimes.com";, destfile<-tempfile())
> >
> > Error:
> > trying URL 'http://www.nytimes.com'
> > Error in download.file("http://www.nytimes.com";, destfile <-
> > tempfile()) :
> > cannot open URL 'http://www.nytimes.com'
> > In addition: Warning message:
> > In download.file("http://www.nytimes.com";, destfile <-
> tempfile()) :
> > unable to resolve 'www.nytimes.com'
> >
> >
> > 2) install.packages("GenABeL", lib= "/home/software/GenABEL", dep
> =
> > TRUE,
> > method = "wget")
> >
> > Error:
> > Selection: 43
> > sh: wget: command not found
> > Error in gzfile(file, "r") : unable to open connection
> > In addition: Warning messages:
> > 1: In open.connection(con, "r") : unable to resolve 'cran.r-
> > project.org'
> > 2: In gzfile(file, "r") :
> > cannot open compressed file
> > '/tmp/8379702.hpc-pbs.usc.edu/RtmpmUR48z/file66334873', probable
> > reason 'No
> > such file or directory'
> >
> > --
> > View this message in context: http://r.789695.n4.nabble.com/R-
> cannot-access-the-web-tp2215881p2215881.html
> > Sent from the R help mailing list archive at Nabble.com.
> >
> > ______________________________________________
> > R-help@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide http://www.R-project.org/posting-
> guide.html> and provide commented, minimal, self-contained,
> reproducible code.
>
> David Winsemius, MD
> West Hartford, CT
>
> ______________________________________________
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-
> guide.htmland provide commented, minimal, self-contained,
> reproducible code.
>
>
> ______________________________________
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