On 10/05/2010 7:43 AM, Assa Yeroslaviz wrote:
Hello everybody,
I'm trying to install a package I have built. This package contains three
scripts with various functions (S3 as well as S4 classes)
I run at first the package.skeleton command with:
> package.skeleton("affyAnalysis", namespace=TRUE, code_files =c("defS3.R",
"defS4.R", "qc.R"))
affyAnalysis is the name of the supposed package and the three script are
listed at the end.
results:
Creating directories ...
Creating DESCRIPTION ...
Creating NAMESPACE ...
Creating Read-and-delete-me ...
Copying code files ...
Making help files ...
Done.
Further steps are described in './affyAnalysis/Read-and-delete-me'.
afterwards i tried to install the made package but i encountered a problem
with the RD files.
As I am working on windows I did it with the R CMD Install -l
path/to/library affyAnalysis.
As a result I'm getting the error message:
C:\Dokumente und Einstellungen\balt\Desktop>R CMD INSTALL affyAnalysis
* installing to library 'C:\Programme\R\R-2.11.0\library'
* installing *source* package 'affyAnalysis' ...
** R
** preparing package for lazy loading
** help
Warning: ./man/affyAnalysis-package.Rd:35: All text must be in a section
Warning: ./man/affyAnalysis-package.Rd:36: All text must be in a section
Warning: ./man/z_-methods.Rd: \name should not contain !, | or @
*** installing help indices
Error in Rd_info(db[[i]]) : Rd files must have a non-empty \title.
See chapter 'Writing R documentation' in manual 'Writing R Extensions'.
* removing 'C:\Programme\R\R-2.11.0\library/affyAnalysis'
My question is is there a way around it?
I don't want to publish this package. It's just a compendium of various
functions I often use, so i wrote them as a package.
How can I install this package under R-2.11.0 without so much trouble as
changing ALL of my RD files?
You could delete them all (or move them to another directory). You
won't pass R CMD check, but it sounds as though you don't care about that.
Alternatively, you could write a small function to replace the comment
asking for a title with a junk title. Just loop over all the Rd files,
read them, substitute for the default title line, and write them back.
If you don't want informative help files, it's really not much work to
make uninformative ones.
Duncan Murdoch
THX for the help
Assa
> R.version
platform i386-pc-mingw32
arch i386
os mingw32
system i386, mingw32
status
major 2
minor 11.0
year 2010
month 04
day 22
svn rev 51801
language R
version.string R version 2.11.0 (2010-04-22)
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