Thanks Jim! I forgot the data$predict. Now it works for me too.
Thanks so much! On Wed, May 5, 2010 at 9:36 AM, jim holtman <jholt...@gmail.com> wrote: > Works fine for me: > > > x > gene_id predict > 43 637882902 0.07823997 > 53 638101634 0.66256490 > 61 639084581 0.08587504 > 41 637832824 0.02461066 > 25 637261662 0.11613879 > 22 637240022 0.06350477 > 62 639084582 0.02238538 > 63 639097718 0.06792841 > 44 637943079 0.04532625 > 80 640158389 0.06582658 > 3 637006517 0.57648451 > 49 638072100 0.01391633 > 4 637007046 0.08999928 > 13 637047086 0.01493464 > 74 639787397 0.01283783 > 58 638936569 0.29182988 > 24 637261661 0.02561841 > 59 639006028 0.31732711 > 38 637585227 0.31272531 > 35 637399473 0.10687524 > > x[order(-x$predict),] > gene_id predict > 53 638101634 0.66256490 > 3 637006517 0.57648451 > > 59 639006028 0.31732711 > 38 637585227 0.31272531 > 58 638936569 0.29182988 > 25 637261662 0.11613879 > 35 637399473 0.10687524 > 4 637007046 0.08999928 > 61 639084581 0.08587504 > 43 637882902 0.07823997 > 63 639097718 0.06792841 > 80 640158389 0.06582658 > 22 637240022 0.06350477 > 44 637943079 0.04532625 > 24 637261661 0.02561841 > 41 637832824 0.02461066 > 62 639084582 0.02238538 > 13 637047086 0.01493464 > 49 638072100 0.01391633 > 74 639787397 0.01283783 > > > I would check your data. Do 'str()' on the data. > > On Wed, May 5, 2010 at 12:31 PM, Changbin Du <changb...@gmail.com> wrote: > >> > #sort the data by predicted probability >> > b.order<-bo.id.pred[(order(-predict)),] >> > b.order[1:20,] >> gene_id predict >> 43 637882902 0.07823997 >> 53 638101634 0.66256490 >> 61 639084581 0.08587504 >> 41 637832824 0.02461066 >> 25 637261662 0.11613879 >> 22 637240022 0.06350477 >> 62 639084582 0.02238538 >> 63 639097718 0.06792841 >> 44 637943079 0.04532625 >> 80 640158389 0.06582658 >> 3 637006517 0.57648451 >> 49 638072100 0.01391633 >> 4 637007046 0.08999928 >> 13 637047086 0.01493464 >> 74 639787397 0.01283783 >> 58 638936569 0.29182988 >> 24 637261661 0.02561841 >> 59 639006028 0.31732711 >> 38 637585227 0.31272531 >> 35 637399473 0.10687524 >> >> >> >> HI, Dear R community, >> >> I am sorting the data set bo.id.pred by variable predict, why it does not >> work? The sequence changed compared with original data set, but you can >> not >> read any descending pattern. >> >> Thanks! >> >> -- >> Sincerely, >> Changbin >> -- >> >> [[alternative HTML version deleted]] >> >> ______________________________________________ >> R-help@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide >> http://www.R-project.org/posting-guide.html<http://www.r-project.org/posting-guide.html> >> and provide commented, minimal, self-contained, reproducible code. >> > > > > -- > Jim Holtman > Cincinnati, OH > +1 513 646 9390 > > What is the problem that you are trying to solve? > -- Sincerely, Changbin -- [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
