Hi guys,
I'm trying to install Rmpi on the slave nodes of my cluster. The
installation seems to work with no errors or warnings using this
command:
R CMD INSTALL
--configure-args="--with-Rmpi-include=/usr/lib64/openmpi/1.3.2-gcc/include
--with-Rmpi-libpath=/usr/lib64/openmpi/1.3.2-gcc/lib
--with-Rmpi-type=OPENMPI" Rmpi_0.5-8.tar.gz
But when I attempt to load Rmpi I get the following error:
> library(Rmpi)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library '/usr/lib64/R/library/Rmpi/libs/Rmpi.so':
libmpi.so.0: cannot open shared object file: No such file or directory
Error in library(Rmpi) : .First.lib failed for 'Rmpi'
Error in dyn.unload(file.path(libpath, "libs", paste("Rmpi",
.Platform$dynlib.ext, :
dynamic/shared library '/usr/lib64/R/library/Rmpi/libs/Rmpi.so' was not loaded
I wonder does anybody have an ideas as to what might be wrong here?
It seemed to install just fine on my master node by the way.
Thanks,
Paul.
--
Paul Geeleher
School of Mathematics, Statistics and Applied Mathematics
National University of Ireland
Galway
Ireland
--
www.bioinformaticstutorials.com
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