Thanks for all your reply.  I am a biologist and only start to use R
recently. Yes, It is my fault. I assume that perm.test is a very popular
method. Thanks for Dennis to point out that it is in exactRankTests package.
I did not realize that there are so many R package. I guess I did not ask
the right question and neither in the right way.

Based on my limited knowledge on statistics, it seems like use t-statistics
to test the permutation. I am just not sure.

Xiang





exactRankTests

On Fri, Apr 23, 2010 at 9:13 AM, Greg Snow <greg.s...@imail.org> wrote:

> There is no perm.test function in base R, is this from a package? Which
> package? What does the documentation for that function/package say?
>
> --
> Gregory (Greg) L. Snow Ph.D.
> Statistical Data Center
> Intermountain Healthcare
> greg.s...@imail.org
> 801.408.8111
>
> > -----Original Message-----
> > From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-
> > project.org] On Behalf Of Xiang Gao
> > Sent: Thursday, April 22, 2010 1:43 PM
> > To: r-help@r-project.org
> > Subject: [R] What is the test statistics in perm.test
> >
> > Hi,
> >
> > The permutation test for two samples in R is function perm.test(). I
> > could
> > not figure out what is the statistics it estimate and how many
> > permutation
> > it did in default?
> >
> > Thanks,
> >
> >       [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-help@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide http://www.R-project.org/posting-
> > guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>



-- 
Xiang Gao, Ph.D.
Department of Biology
University of North Texas

        [[alternative HTML version deleted]]

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