Dear Lists:
I recently ran quite annoyance problem while running R on Ubuntu 9.10.
When running the program, the system suddenly exit from the R
session with the following warnings:
############################ #############
OMP: Hint: This may cause performance degradation and correctness
issues. Set environment variable KMP_DUPLICATE_LIB_OK=TRUE to ignore
this problem and force the program to continue anyway. Please note
that the use of KMP_DUPLICATE_LIB_OK is unsupported and using it may
cause undefined behavior. For more information, please contact
Intel(R) Premier Support.
Aborted
##########################################
I have to restart R again, and all the calculations are being lost.
According to the warnings, I set the environment to true, no good. I
reinstalled the R program again, no good either. I googled the
problem, it seems that there was no R help on the topic so far.
Any suggestions that the whole OS may have conflicts? I have only one
copy of the following file on my computer system?
/usr/lib/R/lib/libguide.so
Thanks.
jacob
#############################################################################
>options("KMP_DUPLICATE_LIB_OK")
$KMP_DUPLICATE_LIB_OK
[1] TRUE
> sessionInfo()
R version 2.10.1 (2009-12-14)
x86_64-pc-linux-gnu
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] datasets grDevices splines graphics stats utils methods
[8] base
other attached packages:
[1] Design_2.3-0 Hmisc_3.7-0 survival_2.35-8
[4] GEOquery_2.11.3 RCurl_1.4-0 bitops_1.0-4.1
[7] affy_1.24.2 Biobase_2.6.1 preprocessCore_1.8.0
[10] R.methodsS3_1.0.3
loaded via a namespace (and not attached):
[1] affyio_1.14.0 cluster_1.12.1 grid_2.10.1 lattice_0.18-3
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