I'm currently doing a lot of simple GIS work in R, including points in polygon queries. My .Rprofile file has

   require(maptools)
   require(rgdal)

With that as a starting point, I find that the data structures play well together.

Define a coordinate reference system object with
 crs.ll <-  CRS('+proj=longlat +ellps=GRS80 +datum=NAD83 +no_defs')

Load a shapefile with

  my.shp <- readOGR('directoryname','filename',  p4s=CRSargs(crs.ll) )

This will give you an object of class SpatialPolygonsDataFrame. readOGR() is in the rgdal package.

readShapeSpatial or readShapePoly from the maptools package should work as well, and I used to use them, but lately I've been using readOGR().

Then the overlay() function in the sp package will do your #2. But I do think you'll need your points to be one of the SpatialPoints classes.


Omitting the p4s argument from readOGR() might work, I'm not sure.
Or, I think you might be able to just supply the text string, i.e.,
    p4s='+proj=longlat +ellps=GRS80 +datum=NAD83 +no_defs'
but I have found it handy to have several projections predefined, as in
     crs.ll <-  CRS('+proj=longlat +ellps=GRS80 +datum=NAD83 +no_defs')
     crs.utm <- CRS('+init=epsg:32610')
for use in the spTransform() function.

Also, your question would go better on R-sig-geo mailing list.

A final note, some plotting functions need to have the sp package earlier in the search() path than maptools.

-Don

At 9:37 AM -0600 4/1/10, Scott Duke-Sylvester wrote:
I have a simple problem: I need to load a ERSI shapefile of US states
and check whether or not a set of points are within the boundary of
these states. I have the shapefile, I have the coordinates but I'm
having a great deal of difficulty bringing the two together. The
problem is the various GIS packages for R do not play well with each
other. sp, shapefiles, maptools, etc all use different data
structures. Can someone suggest a simple set of commands that will
work together that will:

1) load the shapefile data.
2) Allow me to test whether or not a (lng,lat) coordinate pair are
inside or outside the polygons defined in the shapefile.

Many thanks,
scott.

--
Scott M. Duke-Sylvester
Assistant Professor
Department of Biology

Office : 300 E. St. Mary Blvd
             Billeaud Hall, Room 141
             Lafayette, LA 70504

Mailing address : UL Lafayette
                  Department of Biology
                  P.O.Box 42451
                  Lafayette, LA 70504-2451

Phone : 337 482 5304
Fax   : 337 482 5834
email : smd3...@louisiana.edu

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--------------------------------------
Don MacQueen
Environmental Protection Department
Lawrence Livermore National Laboratory
Livermore, CA, USA
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