Dear R users I am attempting to add lncdf_1.6.tar.gz libraries within R, and have failed. I have R version 2.8.1, and are running on fedora 10 Kernel Linux 2.6.293.-60.fc10.x86_64. I've run R CMD INSTALL ncdf_1.6.tar.gz and I have the following --------------- * Installing to library '/usr/lib64/R/library' * Installing *source* package 'ncdf' ... checking for gcc... gcc -m64 -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -m64 -std=gnu99 accepts -g... yes checking for gcc -m64 -std=gnu99 option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -m64 -std=gnu99 -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes Found netcdf.h in: . checking for nc_open in -lnetcdf... yes Found netcdf library file libnetcdf.a in directory . configure: creating ./config.status config.status: creating R/load.R config.status: creating src/Makevars ** libs gcc -m64 -std=gnu99 -I/usr/include/R -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ncdf2.c -o ncdf2.o gcc -m64 -std=gnu99 -I/usr/include/R -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ncdf3.c -o ncdf3.o ncdf3.c: In function ‘R_nc_get_vara_charvarid’: ncdf3.c:221: warning: assignment discards qualifiers from pointer target type ncdf3.c: In function ‘R_nc_get_vara_numvarid’: ncdf3.c:267: warning: assignment discards qualifiers from pointer target type ncdf3.c:249: warning: ‘rv_data’ may be used uninitialized in this function gcc -m64 -std=gnu99 -I/usr/include/R -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ncdf.c -o ncdf.o ncdf.c: In function ‘R_nc_get_vara_double’: ncdf.c:196: warning: format ‘%u’ expects type ‘unsigned int’, but argument 3 has type ‘size_t’ ncdf.c:202: warning: format ‘%u’ expects type ‘unsigned int’, but argument 3 has type ‘size_t’ ncdf.c: In function ‘R_nc_get_vara_int’: ncdf.c:239: warning: format ‘%u’ expects type ‘unsigned int’, but argument 3 has type ‘size_t’ ncdf.c:245: warning: format ‘%u’ expects type ‘unsigned int’, but argument 3 has type ‘size_t’ ncdf.c: In function ‘R_nc_get_vara_text’: ncdf.c:296: warning: format ‘%u’ expects type ‘unsigned int’, but argument 3 has type ‘size_t’ ncdf.c:302: warning: format ‘%u’ expects type ‘unsigned int’, but argument 3 has type ‘size_t’ ncdf.c: In function ‘R_nc_ttc_to_nctype’: ncdf.c:424: warning: implicit declaration of function ‘exit’ ncdf.c:424: warning: incompatible implicit declaration of built-in function ‘exit’ ncdf.c: In function ‘R_nc_put_vara_double’: ncdf.c:582: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘size_t’ ncdf.c:585: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘size_t’ gcc -m64 -std=gnu99 -shared -L/usr/local/lib64 -o ncdf.so ncdf2.o ncdf3.o ncdf.o -L. -lnetcdf -L/usr/lib64/R/lib -lR /usr/bin/ld: /usr/local/lib/libnetcdf.a(attr.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC /usr/local/lib/libnetcdf.a: could not read symbols: Bad value collect2: ld returned 1 exit status make: *** [ncdf.so] Error 1 chmod: cannot access `/usr/lib64/R/library/ncdf/libs/*': No such file or directory ERROR: compilation failed for package 'ncdf' ** Removing '/usr/lib64/R/library/ncdf' ---------------
Any help is strongly appreciated, thank you in advance -- View this message in context: http://n4.nabble.com/install-ncdf-package-tp1680818p1680818.html Sent from the R help mailing list archive at Nabble.com. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
